XLOC_009463 (rps5)


Basic Information

Item Value
gene id XLOC_009463
gene name rps5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 39964943 ~ 39971756 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018585
GCATTGAGCGGAAGTGGTTTTTTTCTCGCTCCTCGTGTCGCTCTTCCTTTCCGCCTGCTCGAGTGCGCCATTCACACACACGCTGCGAAGATGGCTGAAGATTGGGAGGCTGCACCAGCTGTTGCTGAAACACCAGAGATCAAACTCTTTGGCAAGTGGAGCACAGATGATGTACAGATCAATGACATCTCCCTGCAGGATTACATTGCCGTGAAGGAGAAATACGCCAAATACCTCCCTCATTCCAGCGGCAGATACGCAGCCAAGCGTTTCCGTAAGGCTCAGTGTCCCATTGTGGAGCGCGTCACTAACTCCATGATGATGCACGGACGCAACAACGGCAAGAAACTGCTGACCGTTCGCATCGTCAAGCACGCTTTTGAGATCATCCACCTGCTCACTGGCGAGAATCCTCTGCAGATTCTGGTAAACGCCATCATCAACAGTGGCCCTCGTGAGGACTCCACCCGTATCGGACGTGCTGGAACCGTGAGGAGACAGGCTGTTGATGTGTCCCCCCTGCGCAGAGTCAACCAGGCCATCTGGCTGCTCTGCACTGGTGCAAGAGAAGCTGCTTTCAGGAACATCAAGACCATCGCAGAGTGTCTTGCTGACGAGCTCATCAACGCTGCCAAGGGTTCCTCCAACTCTTACGCCATCAAGAAGAAAGATGAGCTGGAGAGAGTGGCCAAGTCTAACCGCTAATCTCCATTTTGTATAAAATCGGATTACATTAAAAGAGGAAGAGTTAAACCTA
>TCONS_00018586
AATATTCTTTATTTTCCTCTAAAGATGGCTGAAGATTGGGAGGCTGCACCAGCTGTTGCTGAAACACCAGAGATCAAACTCTTTGGCAAGTGGAGCACAGATGATGTACAGATCAATGACATCTCCCTGCAGGATTACATTGCCGTGAAGGAGAAATACGCCAAATACCTCCCTCATTCCAGCGGCAGATACGCAGCCAAGCGTTTCCGTAAGGCTCAGTGTCCCATTGTGGAGCGCGTCACTAACTCCATGATGATGCACGGACGCAACAACGGCAAGAAACTGCTGACCGTTCGCATCGTCAAGCACGCTTTTGAGATCATCCACCTGCTCACTGGCGAGAATCCTCTGCAGATTCTGGTAAACGCCATCATCAACAGTGGCCCTCGTGAGGACTCCACCCGTATCGGACGTGCTGGAACCGTGAGGAGACAGGCTGTTGATGTGTCCCCCCTGCGCAGAGTCAACCAGGCCATCTGGCTGCTCTGCACTGGTGCAAGAGAAGCTGCTTTCAGGAACATCAAGACCATCGCAGAGTGTCTTGCTGACGAGCTCATCAACGCTGCCAAGGGTTCCTCCAACTCTTACGCCATCAAGAAGAAAGATGAGCTGGAGAGAGTGGCCAAGTCTAACCGCTAATCTCCATTTTGTATAAAATCGGATTACATTAAAAGAGGAAGAGTTAAACC

Function

symbol description
rps5 Predicted to enable mRNA binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly and translation. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in ribosome. Orthologous to human RPS5 (ribosomal protein S5).

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko04626 Plant-pathogen interaction
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-020419-12 Predicted to enable mRNA binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly and translation. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in ribosome. Orthologous to human RPS5 (ribosomal protein S5).

Ensembl:

ensembl_id ENSDARG00000043453

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018585 False 757 mRNA 0.52 6 39964943 39971756
TCONS_00018586 True 689 mRNA 0.50 5 39964945 39969988

Neighbor

gene id symbol gene type direction distance location
XLOC_009462 lypc coding downstream 1934 39957809 ~ 39963009 (-)
XLOC_009461 msh5 coding downstream 9158 39934295 ~ 39955785 (-)
XLOC_009460 NA coding downstream 116121 39847491 ~ 39848822 (-)
XLOC_009459 robo1 coding downstream 144452 39277099 ~ 39820491 (-)
XLOC_009458 NA coding downstream 1012514 38948423 ~ 38952429 (-)
XLOC_009464 NA coding upstream 31108 40002864 ~ 40006538 (-)
XLOC_009465 lpar5b coding upstream 68399 40040155 ~ 40041455 (-)
XLOC_009466 gpr55a coding upstream 79462 40051218 ~ 40065296 (-)
XLOC_009467 CR759918.2 coding upstream 97255 40069011 ~ 40069127 (-)
XLOC_009468 CR388129.1 coding upstream 153653 40125409 ~ 40129541 (-)
XLOC_009457 NA non-coding downstream 1054672 38901933 ~ 38910271 (-)
XLOC_009456 NA non-coding downstream 1414139 38547827 ~ 38550804 (-)
XLOC_009455 NA non-coding downstream 1539098 38425548 ~ 38425845 (-)
XLOC_009471 BX571794.3 non-coding upstream 384623 40356379 ~ 40360753 (-)
XLOC_009472 NA non-coding upstream 1097018 41068774 ~ 41072197 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000095_04358210_04362581 RS5, RPS5, RPS5.S coding CI01000095 null 4357703 ~ 4362609 (+)
bowfin (Amia calva) AMCG00006304 rps5,LOC106570065 coding CM030134.1 CM030134.1 1808656 ~ 1818368 (-)