G200711


Basic Information

Item Value
gene id G200711
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 1606841 ~ 1607453 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU227748
AAGTTTTTACTTTACAAAGAATGCAATGCAAACCAGAATTAGTATCTGTTGTGACAAACAAATCAGTGAACCACATATTAAGGCATTAATAGTCTGATGTGGGGATAAGCTAGAGCAATACCACAGTGAGTTAAGGCTCAAAGGTGTCCTATCTGTTAATGATAGCAGTAAAATGAGCAAACGTTACATTCATTCGTCAACAATAAAAGGTATCAATCAATAAAAGGTAGGTGGGGCTGGAAATGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTAAACAAAAGAGAAACATTAAATATGTTCCTGGTTCTCCTGCTCAATCTAATGAATTGTGCTCTCAGAGAATACATTGTGAAAGAATGAAAGACAAAAATGTTACAGACACACCCTGTATTAAAGGTGAAAAGCGCTAATGTCATGCTGCAGCGAATACAGTCATGTTTTTGTGGGAGGCTGTACACTTTCAGCATTCACCTGGCCACCGTAACCAACTAACTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACACTCATGTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU227748 True 613 lncRNA 0.33 1 1606841 1607453

Neighbor

gene id symbol gene type direction distance location
CI01000047_01470439_01470729 NA coding downstream 136047 1470399 ~ 1470794 (-)
CI01000047_01404421_01451987 NA coding downstream 154788 1404371 ~ 1452053 (-)
CI01000047_01375108_01392690 RHOBTB1.S, RHOBTB2, RHOBTB1 coding downstream 214151 1374913 ~ 1392690 (-)
CI01000047_01373782_01374697 NA coding downstream 231987 1373782 ~ 1374854 (-)
CI01000047_01337067_01353593 NA coding downstream 253248 1336969 ~ 1353593 (-)
CI01000047_01654684_01688086 PHYHIPL, PHYHIPLB coding upstream 46685 1654138 ~ 1688308 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 coding upstream 101067 1706068 ~ 1744282 (-)
CI01000047_01813106_01813800 NA coding upstream 205404 1812857 ~ 1814122 (-)
CI01000047_01823330_01823581 NA coding upstream 215819 1823272 ~ 1823581 (-)
CI01000047_01824882_01828103 TFAM coding upstream 217429 1824882 ~ 1828952 (-)
G200712 NA non-coding downstream 189 1606285 ~ 1606652 (-)
G200720 NA non-coding downstream 53508 1552004 ~ 1553333 (-)
G200763 NA non-coding downstream 150307 1456183 ~ 1456534 (-)
G200682 NA non-coding downstream 239502 1367124 ~ 1367339 (-)
G200681 NA non-coding downstream 239754 1366740 ~ 1367087 (-)
G200827 NA non-coding upstream 19168 1626621 ~ 1626846 (-)
G200847 NA non-coding upstream 87764 1695217 ~ 1695451 (-)
G200850 NA non-coding upstream 92521 1699974 ~ 1700241 (-)
G200869 NA non-coding upstream 253129 1860582 ~ 1860871 (-)
G200880 NA non-coding upstream 281304 1888757 ~ 1889106 (-)
G200472 NA other downstream 772370 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 1084599 519108 ~ 522245 (-)
G200299 NA other downstream 1338806 267530 ~ 268035 (-)
G202733 NA other upstream 1524860 3132313 ~ 3133652 (-)
G202944 NA other upstream 2190350 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 2605956 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 2671455 4285227 ~ 4286694 (-)

Expression


Co-expression Network