G200003


Basic Information

Item Value
gene id G200003
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2316863 ~ 2318962 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU226970
CTTCCGTATATATGTTTCAACATGTATAACACAAAATTACTTCAAAGTAATAAAAACTAAAAATAGCCTTCCTGATGCAATTAAATACAGACTTTGAATTTCATTTTTTTTTCCCTAGTGGTGGAAAGGTCTCTTATGGCTTATTAAATATAGACACACCTTATTAAATACCTTAATTAAAGTTCTGGAAGGGAATACATAAAACCTCCTCAGCTCTGACCGCACCTAACTTAGCATTCTGTGTATCCTTTACATGCAGCATGAAAAACTCTCTCTTAATTCTCTTAATGCAAGTATGACTTAAAACACTGTATACTGAATATCATCTTTACACTCTTTATTTAGAATAAAATAGACATTTAAATCAGCTCTATATGACTGTAAAAACCAGAAGTATACACATTTAAGATAGACTAGCAAAAGACTGAAGCACCTTCTTTCAAAACAGGGTTGACAAAAATATCTGAAGTAAGTGCCAACTGCCTTATATTATTTACAGTATAATACAGTAATTTACTGCAATATTTAAGTTCCGTTGAGAAACAATTATATCTACTCTGCAATGTTGACACAAGAAAATGGAGGAAACCAGTTGAAAAACAGAGTATCCCATTCCAAGTCCTGCTTCCCTCAACCGCTCATCGCTCAAGTCTGTTTTTTGCTTCTCTCGGAGCTTGTGAAAGAAATTCCTTGAACGTTCATTCAGTGTCTCTGGCAGGTGTGCAGACTCCGTGATGACTTGCTGCCATCTCCTCTTTGCGTTCTGCAGGACAGACCTTCCCCACAATCGCAACGCTGGAATATCTCTAAGCCATGGGTGCCTTTCCTCTTGTGCTTGGTGCAGACCTGGCCTTCTTTTAGGACGGGCTTGCAGATTTTGGACCAAAAGTGACGAGCGCAGCAGAGTCCCTCAGCACAATCTGATGACCTCAGACAGTTTTCTCCCTCCAGTCCTTTCAGCATTTGGTTTTGTGGTGAACCTTGAGTTGCAACTTTTGGTGGCACCACAACAGTAGAGTTTTCATGGGAGATTGACACAAACTCTTCCATTCCAATCTGATGAATCATGTCAGGATCGTTTGGAAGACAAACTCCATTGCTGCAATGGTTGCCAGGGCAGCACATCGCATCCCGGATGCAGCGCTTCCTGCGCTTCTTGCACTGGAGACAGACTCCGCGAGACAGGAAACAGAACTCCTCGCCACCGCATTCCTCATCACTCTCGCAGATTAAAGGCTGCTGCGGTGTATCAATGGCGAAGTTCAGACTGCCGCTGTCCGCAGGTGACTCATCCGGACTCGGGCTGACCGGGAGACCGGGATTCGACACACCTGAACCGACCTTAATAGCATTCGAGTTGAGCACCACAGAACCAGCGGATGCCACTTTGATGTAGCCCACAAGAATGAGGCATGCGGTAGAGAACATGGCAATGTGCAGCATTGTCAGGTCTGCTATTCCTTGGATGGAGGATGTATTCCCGAGGTGAGCAGAGCTCTTCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU226970 True 1503 TUCP 0.43 4 2316863 2318962

Neighbor

gene id symbol gene type direction distance location
CI01000047_02265701_02270952 PCDH15 coding upstream 45198 2265701 ~ 2271665 (+)
CI01000047_02233861_02257560 NA coding upstream 58441 2233593 ~ 2258422 (+)
CI01000047_02105957_02212505 PCDH15B, PCDH15 coding upstream 104349 2105957 ~ 2212514 (+)
CI01000047_01838291_01856228 IPMK coding upstream 460274 1837443 ~ 1856589 (+)
CI01000047_01831728_01834017 UBE2D4, UBE2D4.L, UBE2D1A, UBE2D1B, UBE2D1 coding upstream 482846 1831728 ~ 1834017 (+)
CI01000047_02496216_02496407 NA coding downstream 177254 2496216 ~ 2496521 (+)
CI01000047_02498979_02505234 A1CF coding downstream 179612 2498574 ~ 2505743 (+)
CI01000047_02562428_02569496 AARSD1 coding downstream 243331 2562293 ~ 2570388 (+)
CI01000047_02581276_02587652 G6PCA.1 coding downstream 261957 2580919 ~ 2589521 (+)
CI01000047_02602977_02614833 MYST2, KAT7B, KAT7 coding downstream 284015 2602977 ~ 2615082 (+)
G199895 NA non-coding upstream 306863 2009676 ~ 2010000 (+)
G199875 NA non-coding upstream 364558 1952051 ~ 1952305 (+)
G199850 NA non-coding upstream 407651 1908704 ~ 1909212 (+)
G199841 NA non-coding upstream 427587 1888628 ~ 1889276 (+)
G199838 NA non-coding upstream 433423 1883215 ~ 1883440 (+)
G200005 NA non-coding downstream 3665 2322627 ~ 2322840 (+)
G200006 NA non-coding downstream 3998 2322960 ~ 2325338 (+)
G200015 NA non-coding downstream 16140 2335102 ~ 2335321 (+)
G200016 NA non-coding downstream 16398 2335360 ~ 2335799 (+)
G200017 NA non-coding downstream 17305 2336267 ~ 2336468 (+)
CI01000047_01749606_01752688 NA other upstream 564026 1749606 ~ 1752688 (+)
G199386 NA other upstream 1351407 929871 ~ 965456 (+)
CI01000047_00773429_00831230 EXOC6 other upstream 1484253 773429 ~ 832610 (+)
G199401 NA other upstream 1499779 816480 ~ 817084 (+)
G199380 NA other upstream 1855187 460019 ~ 461676 (+)
G200076 NA other downstream 201634 2520596 ~ 2577997 (+)
G201186 NA other downstream 699743 3018705 ~ 3088187 (+)
G201387 NA other downstream 1377554 3696516 ~ 3701860 (+)
G201599 NA other downstream 2096851 4415813 ~ 4482457 (+)
G202382 NA other downstream 4496755 6815717 ~ 6816118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004516 dkk1b coding NC_007123.7 CM002896.2 6465557 ~ 6467675 (+)