G200040


Basic Information

Item Value
gene id G200040
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2380673 ~ 2380985 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU227016
TTGGCTTCTCGGAGATGGTGTTTTTATTACTCAACAGTAATAAAATATGTGTCACATGTAGCTCTCTAACAAAATACAATAATCTATTGTGAAGGCTCAATTCATTACGGCTGTGCTGGAATTTATTTTCAAGGAAGTACCATGTCTATTAATGGGTATAGCTACAGTAACGTCTTCATTTAGTCAGCTTGAGATCCATCTAAACTAGTTAAATCTCTTAAGCCTAGTAGTGAACGTTTTATGAGCAGTAGGATCATCTCTCTCTCTCTTTGGCCAGAAAAGAAATTGCAATGTTTGACCATATTAGACTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227016 True 313 lncRNA 0.36 1 2380673 2380985

Neighbor

gene id symbol gene type direction distance location
CI01000047_02265701_02270952 PCDH15 coding upstream 109008 2265701 ~ 2271665 (+)
CI01000047_02233861_02257560 NA coding upstream 122251 2233593 ~ 2258422 (+)
CI01000047_02105957_02212505 PCDH15B, PCDH15 coding upstream 168159 2105957 ~ 2212514 (+)
CI01000047_01838291_01856228 IPMK coding upstream 524084 1837443 ~ 1856589 (+)
CI01000047_01831728_01834017 UBE2D4, UBE2D4.L, UBE2D1A, UBE2D1B, UBE2D1 coding upstream 546656 1831728 ~ 1834017 (+)
CI01000047_02496216_02496407 NA coding downstream 115231 2496216 ~ 2496521 (+)
CI01000047_02498979_02505234 A1CF coding downstream 117589 2498574 ~ 2505743 (+)
CI01000047_02562428_02569496 AARSD1 coding downstream 181308 2562293 ~ 2570388 (+)
CI01000047_02581276_02587652 G6PCA.1 coding downstream 199934 2580919 ~ 2589521 (+)
CI01000047_02602977_02614833 MYST2, KAT7B, KAT7 coding downstream 221992 2602977 ~ 2615082 (+)
G200010 NA non-coding upstream 242 2380034 ~ 2380431 (+)
G200036 NA non-coding upstream 15397 2365055 ~ 2365276 (+)
G200035 NA non-coding upstream 16853 2363608 ~ 2363820 (+)
G200033 NA non-coding upstream 19167 2361275 ~ 2361506 (+)
G200032 NA non-coding upstream 19540 2360793 ~ 2361133 (+)
G200041 NA non-coding downstream 2312 2383297 ~ 2383498 (+)
G200059 NA non-coding downstream 37573 2418558 ~ 2418916 (+)
G200060 NA non-coding downstream 39187 2420172 ~ 2421350 (+)
G200061 NA non-coding downstream 41906 2422891 ~ 2423144 (+)
G200062 NA non-coding downstream 43360 2424345 ~ 2425243 (+)
G200003 NA other upstream 61711 2316863 ~ 2318962 (+)
CI01000047_01749606_01752688 NA other upstream 627836 1749606 ~ 1752688 (+)
G199386 NA other upstream 1415217 929871 ~ 965456 (+)
CI01000047_00773429_00831230 EXOC6 other upstream 1548063 773429 ~ 832610 (+)
G199401 NA other upstream 1563589 816480 ~ 817084 (+)
G200076 NA other downstream 139611 2520596 ~ 2577997 (+)
G201186 NA other downstream 637720 3018705 ~ 3088187 (+)
G201387 NA other downstream 1315531 3696516 ~ 3701860 (+)
G201599 NA other downstream 2034828 4415813 ~ 4482457 (+)
G202382 NA other downstream 4434732 6815717 ~ 6816118 (+)

Expression


Co-expression Network