XLOC_009472


Basic Information

Item Value
gene id XLOC_009472
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41068774 ~ 41072197 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019233
aatgtctagacaGCGATTAAGGACAaggttattttgatgtccaataacaacgtcaaattcTGTTGatatttgcttaattttagattgtgttagaaagtgacaaaaatacaacgtctgatagatgtcagagtggtaatgtccacacagcgTCAATGTGTTACATAATTAGACGCTGATATTTGGATGATTTTAGGTTGAATATTGAACATTGACATTGgcttctgacgtcaacctgattttcatttccaaacaaaatccaatgtccccTCGATATTAGGgtatgttggggtacaatgtcaatatgcGTCATGTTGaaatcctgtgcctgcagggatgtTGTTCATAATTCCAgctgaattggtcacatgacttCATGACCATTCACAGAATGTGTTTTTCCATTCCAATGTGCTACTTATCcaatgtttttctaaaataaaacacacaacaaataagataaaaacaaatagtTGAGAGCTGAGAAAACAGCAATTCACAGGCCTCAACTAAAAATGGAAATGTTATGATAATTTAACCATAAAGTATATTAGACACTATAGATTTATATAGATTTGGCTATGCGAGGGTATCATTTTAATTGATCCATTACTTTGGATGTCACTTTGACATTAAAGCATTGCCTGTTCAGCACTATTCTGACCATTATAAGCATTGGCATAAGAATCTATCAACAGACTTTAATAGACAACCTCTGAAGTCAGAAAAACTCTTGTTTTTATAACTTTTGCTTATTACTGGTTTCgtgatgccaaaaaaaaaaagcaattaacaCGTTAACATTTGTACATATAGCCCCTTTAAATATAGGTTAAAATTTCATTACAGACCTGCTAAGTGTGCCATGGTCCAGCATATtatataaaatgcaattaaatgtaATTTCTCACAATATTTAATGATTAAACTATACTTAAGATGTCATAAGTGCATTGATGTCTTTCATAAAGCATTATTACTAAGCGCAATCAGAACCGAAGTTCCTTTAGTGAACGTTTATAGGCCTTCAAAATAAATCACTAAAACCTTAGTGCTTCGTGTATTAATAATTTGGAGTACTTAATATTTGAGGCTTAAATCTGACCCTGAACGGGAAGATCCACTGATTACTGTGAATAGGGTAAACCAATGTCTATGACTCAGTGGGGAAATCACTAGGCATGAATTGTGCTAATAGCTGATAGTTTAATTGCGTATTTTCTAGCACCTGGGATACTAAAGTAACTATGCAAATTAGGCAAACACAACCACAACATTAATGCTTTTTAATTGCAGAATGGAATTTCTGCAATGCAATTCCTGATCACGTCAGTTGCTTTTAAGTGTTAGATCTGTAGTTAAAGTGAATTGCGGGTGTTTATAGTGAGGGTTTTTGCATTTGAATGCTTAGTGAAttcaccttttttattttttttggcaaattCTAGTTTTTAACTTTTGAGGCTTAAAGAgatcatatacacacaaacaatgTACACACAGTTTAAAGTCTACTGattgacaattattattatagtagaaTCTTATTTTATAAGTATTTTACTTAAATCCTTTCCAGGATACTGAAAAACTTTAAAAGCTGTCTGAGGTAAATGCAGAATGTGgggaattaaaaatgtattaaacattttCTTTGCATGAATGTTGGGAATAAATTGGAACAAATTAGTAAGGCTTTAGTAATGCTAATCTCTTCAGtactctaagggtgctttcacacttggttcaattgcctggaccgaaCCCAAGTTTGATTGTCCCCCCTAGCCACTTTCTCGGCTGGTTCGTGCTTACACcgtcttttttcttttctaaaccccgctacgcttgcgtcatcaagctgctgcTTCGTGTACAGATGTTGCTAGGTGATAGCTTCAAAAGCAAAGCAACAAAATGGAGACGTCCGCATATCACGGTCATTCTGCAAAATCAAAATACAGAGAGCCACTCTGTATCCGGTCTATCCGTCTGCGTCCATCTGctgcaaaaataaatttaaaaatgtccaGAACATCACATGATTTCTGCAGAAGTCATTTTCAGTGGAGACAAGCAGATATtcggctctattttgacgatccatTTAGACTCGAGTATGGTTCACAGGTGCACacctgagttcagaagacacgtttacactagctaaacataccgtactatgacgtcaaatgaacccgggtgcggaccaaaagggctagtgtgaaagcaccctaaaaacaaaagctaacaacaacaaaatttgctaaattacattattaaactCCTGCCAACTGAAATTGCAATAAATTTGCAATGCAATTGAATCCATAACATTTTGTGTGAAACAGTAGCTAATCAGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019233 True 2361 lncRNA 0.35 2 41068774 41072197

Neighbor

gene id symbol gene type direction distance location
XLOC_009471 BX571794.3 coding downstream 708021 40356379 ~ 40360753 (-)
XLOC_009470 kcnj13 coding downstream 801289 40217256 ~ 40267485 (-)
XLOC_009469 si:ch211-281l24.3 coding downstream 892880 40137564 ~ 40175894 (-)
XLOC_009468 CR388129.1 coding downstream 939233 40125409 ~ 40129541 (-)
XLOC_009467 CR759918.2 coding downstream 999647 40069011 ~ 40069127 (-)
XLOC_009473 slc36a4 coding upstream 97014 41169211 ~ 41235027 (-)
XLOC_009474 NA coding upstream 166048 41238245 ~ 41246009 (-)
XLOC_009475 usp16 coding upstream 177575 41249772 ~ 41311295 (-)
XLOC_009476 nlrc8 coding upstream 239835 41312032 ~ 41523292 (-)
XLOC_009477 si:dkey-121n8.7 coding upstream 277071 41349268 ~ 41390410 (-)
XLOC_009464 NA non-coding downstream 1062236 40002864 ~ 40006538 (-)
XLOC_009460 NA non-coding downstream 1219952 39847491 ~ 39848822 (-)
XLOC_009478 CR854897.2 non-coding upstream 321204 41393401 ~ 41396073 (-)
XLOC_009482 CR925731.1 non-coding upstream 457063 41529260 ~ 41543440 (-)
XLOC_009483 NA non-coding upstream 568244 41640441 ~ 41667355 (-)
XLOC_009494 NA non-coding upstream 981642 42053839 ~ 42058846 (-)

Expression


Co-expression Network