G202747


Basic Information

Item Value
gene id G202747
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2966977 ~ 2972961 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230072
TTTTATCCTGTTTCAGCAGTGTCCTGACTGCTTCACAACACATCTCAGATACCGTCCTGACGGGGTCGTTCATCAAAGGCACCACCATGACTATAATGTTGTTGTGGAAATTGAAGTGCGGCAGAGCTACCAGGAGATCACAAATGCACTTGATGGCCACTTCAGCAAGACCTTTATAACACTGAAGAGACACGGCTTTACTTCTCTTCTGCTTCTTCTGCTTCCAGTCTTTGACTGTCTGTTCCAGATCCTCCAAGTAAAACTTATACTGGCTGACGAGACCCTCCTCAAACTCTCTCAGCTGCTGCGTATCTTTTTTCACCTTCGTGGCTTTCTCATCTTCCGTCAGAGGTCGGATTCGATATGCCGGCACAATGTCCTTAAACACCTCCATGAGGGAGACCATGACTAACTTTCTGACAGTGACGGCGACGCACGGGTCCGTCTCCATCAGCATGGCCCTCAACTCCTTCAGCTTCTTGATGTTAACATGTGGATCTGCGAGTATCGCTGATGACAGACTTGCGATGCGCAGTTTCTTCTCCATCAGTGTCTGAGTCCGCAGCTCTAGCTGCTCCTGAGGAGTGAGCAATGGACCAATCTCTGGTTCCTCCTCTATTTCTAATTCATCCTGGTCCTTCGGTTCCTCCTCTTCCTCTGCCTCAGGCACAACGGGTTTCTCCATGGACTGAGGGATCAGGCCGCTCTTGTCTTTGATGGGCAGCAGGTGAATGAGCTCTTTCTCCTCCTTCTGCTGCATCTTCCTGGGCATCTTCTCATACTTCTCCACAGGCTGCTCGGACTTACGCTTTTTGGCATGTACTGGAGCACATGATGAGATGTCTCGAGTCAGAAAGGAAGCTTTCTGTGCCATGGCTTTGATCTGTTCAAGGTCATCCTCATCCATCATATCAGTGGGCAGAGTTTCCAGGAACTCCTCCTCCTCTTCTTCATCCTCTGGTTTCTTCTTGTAGCGCTCCAGGGGTTTGAGGGTCTGATGGGAGACATCAGTAATGGCTTGCCGGAGTTTCCGCTGCTCTTTGCGCTGTTTCTTAGCTGAGCTCTGTTGCTTGAACTGACGATTCTTCAGTTTGTTTTCTAGCTTCAGATTGCTGGTTTTCAGCAATTTTCTGAAGCTAGGCTTCTTTTTCCTGTTCTTTTTGGAAGCCGGGCCCATTTTGGTGAGTGATTCGCCTCAACTATCAATGACGTTTCAAATGTGTAAATCAATCTAATCCAAAAAAAAAAAGTGTGCATGTATCCACTCTTCACACATGTACCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU230072 True 1283 lncRNA 0.48 10 2966977 2972961

Neighbor

gene id symbol gene type direction distance location
CI01000047_02939538_02940848 DRD6B coding downstream 24559 2939493 ~ 2942418 (-)
CI01000047_02829408_02858055 ACE coding downstream 108415 2828456 ~ 2858562 (-)
CI01000047_02826142_02826444 NA coding downstream 140533 2825743 ~ 2826444 (-)
CI01000047_02747442_02755248 DLX3B coding downstream 211729 2746901 ~ 2755248 (-)
CI01000047_02615438_02617123 NA coding downstream 349705 2615270 ~ 2617272 (-)
CI01000047_03002349_03064708 PLCE1 coding upstream 29388 3002349 ~ 3065687 (-)
CI01000047_03080182_03082134 SLC35G1 coding upstream 107125 3080086 ~ 3082134 (-)
CI01000047_03085017_03085558 NA coding upstream 112034 3084995 ~ 3085691 (-)
CI01000047_03087382_03094014 LGI1B coding upstream 114119 3087080 ~ 3096017 (-)
CI01000047_03115498_03127047 PDE6C coding upstream 142226 3115187 ~ 3128105 (-)
G202740 NA non-coding downstream 378 2965854 ~ 2966599 (-)
G202774 NA non-coding downstream 67160 2896064 ~ 2899817 (-)
G202767 NA non-coding downstream 78182 2888578 ~ 2888795 (-)
G202766 NA non-coding downstream 80459 2886206 ~ 2886518 (-)
G202732 NA non-coding downstream 85445 2881323 ~ 2881532 (-)
G202755 NA non-coding upstream 105032 3077993 ~ 3088700 (-)
G202792 NA non-coding upstream 124880 3097841 ~ 3100120 (-)
G202757 NA non-coding upstream 140321 3113282 ~ 3113978 (-)
G202733 NA non-coding upstream 159352 3132313 ~ 3133652 (-)
G202847 NA non-coding upstream 359205 3332166 ~ 3334561 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 1251460 1706068 ~ 1744282 (-)
G200472 NA other downstream 2132506 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 2444735 519108 ~ 522245 (-)
G200299 NA other downstream 2698942 267530 ~ 268035 (-)
G202944 NA other upstream 824842 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 1240448 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 1305947 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 1601374 4574335 ~ 4576342 (-)

Expression


Co-expression Network