G201250


Basic Information

Item Value
gene id G201250
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3165842 ~ 3166655 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU228367
ATATCAATTTACAATTCCAAGATTAAAATTCCCAATATACTTCAAGTGAAATTGAAGAACAAACTGGTGTGATGGCATTGGGCGACATGGCAAAAATAAAATCTTGATTTTTCTCAAAACGATTCAACAATTCACACTTACAATTTCTTTAATGTTTACAAACTTACCTTAAACATATCCTATATGCTCGGAAATATAAAAAAGAAAAATGCTAAAAACAGTTCTTAGCCAAAAAGTAGACACCAGTACAGGCCCCAATAGACTTCAAACGAAGAATGAACTGATGTGACATTATTTCGAACAAAATCAGGTGAAAACGAAGTTTGTTTTGGGAGTTCGAAACGGCTTGCCAAAGCAAACTCTCAGGAAAAGTTATAGGTTATAAGTTAAATAATAAATAAGTTATAATAGGAGGTGTGCACTGAGACTCTGCCTTCTTTAACGCAGAACTTTTCTCGGACTCATTTCATCTGTTGAGTCCATCGAGGTAAGATCTCCACAGGTGAAAACATGAACACTGTGGACAGCCACTTTATAGTAGAAAATGAAGTTGTACTTCTGATGAAATGAGGCACTGACACTTTCATGTTTGATACTGTAAAGCTGCTCGCATTTAAGCAATCTATTGAATAAAATGGCATAAATAAACGTTATAAAAGCTATTAACAGCAAATGTTTTCCACTGAGTAGTTTTCCATCGTTTTCTATGCAGCTCCTGCAGCATCTCATGCATGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228367 True 737 lncRNA 0.35 2 3165842 3166655

Neighbor

gene id symbol gene type direction distance location
CI01000047_03132426_03133335 RBP2, RBP4, RBP coding upstream 32413 3132272 ~ 3133429 (+)
CI01000047_03107522_03112233 NA coding upstream 53406 3107293 ~ 3112436 (+)
CI01000047_03097826_03105348 NA coding upstream 60337 3097826 ~ 3105505 (+)
CI01000047_02968461_02978899 NOC3L coding upstream 186899 2968398 ~ 2978943 (+)
CI01000047_02945353_02965219 TBC1D12, TBC1D12B coding upstream 200465 2945353 ~ 2965377 (+)
CI01000047_03247894_03250323 NA coding downstream 80948 3247603 ~ 3250759 (+)
CI01000047_03332251_03337704 MYL3 coding downstream 165136 3331791 ~ 3338294 (+)
CI01000047_03341637_03350635 NA coding downstream 174848 3341503 ~ 3350635 (+)
CI01000047_03377527_03404652 NA coding downstream 210423 3377078 ~ 3405766 (+)
CI01000047_03449375_03457830 NA coding downstream 281866 3448521 ~ 3457851 (+)
G201236 NA non-coding upstream 15562 3144696 ~ 3150280 (+)
G201234 NA non-coding upstream 26268 3136987 ~ 3139574 (+)
G201191 NA non-coding upstream 83645 3081583 ~ 3082197 (+)
G201127 NA non-coding upstream 199233 2965848 ~ 2966609 (+)
G201168 NA non-coding upstream 233228 2932410 ~ 2932614 (+)
G201243 NA non-coding downstream 506 3167161 ~ 3170434 (+)
G201245 NA non-coding downstream 9605 3176260 ~ 3178399 (+)
G201269 NA non-coding downstream 25282 3191937 ~ 3224038 (+)
G201295 NA non-coding downstream 76534 3243189 ~ 3309219 (+)
G201244 NA non-coding downstream 86843 3253498 ~ 3260611 (+)
G201186 NA other upstream 77655 3018705 ~ 3088187 (+)
G200076 NA other upstream 587845 2520596 ~ 2577997 (+)
G200003 NA other upstream 846880 2316863 ~ 2318962 (+)
CI01000047_01749606_01752688 NA other upstream 1413005 1749606 ~ 1752688 (+)
G199386 NA other upstream 2200386 929871 ~ 965456 (+)
G201387 NA other downstream 529861 3696516 ~ 3701860 (+)
G201599 NA other downstream 1249158 4415813 ~ 4482457 (+)
G202382 NA other downstream 3649062 6815717 ~ 6816118 (+)

Expression


Co-expression Network