Item | Value |
---|---|
gene id | G202847 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000047 |
NCBI id | null |
chromosome length | 7523058 |
location | 3332166 ~ 3334561 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU230194 | True | 411 | lncRNA | 0.47 | 3 | 3332166 | 3334561 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000047_03321589_03328761 | GHRHR2 | coding | downstream | 3405 | 3319692 ~ 3328761 (-) |
CI01000047_03271413_03302291 | SCN4AA | coding | downstream | 29795 | 3269915 ~ 3302371 (-) |
CI01000047_03258353_03261127 | NA | coding | downstream | 70341 | 3258353 ~ 3261825 (-) |
CI01000047_03223945_03241971 | NA | coding | downstream | 89450 | 3223623 ~ 3242716 (-) |
CI01000047_03177108_03216092 | ARHGAP27 | coding | downstream | 116034 | 3177083 ~ 3216132 (-) |
CI01000047_03412414_03435209 | KANSL1A | coding | upstream | 77837 | 3412398 ~ 3436183 (-) |
CI01000047_03514753_03523245 | NA | coding | upstream | 179890 | 3514451 ~ 3523245 (-) |
CI01000047_03689400_03699969 | NA | coding | upstream | 354839 | 3689400 ~ 3699969 (-) |
CI01000047_03713156_03716003 | NA | coding | upstream | 378595 | 3713156 ~ 3716003 (-) |
CI01000047_03741720_03750331 | MAPK7 | coding | upstream | 406509 | 3741070 ~ 3750375 (-) |
G202733 | NA | non-coding | downstream | 198514 | 3132313 ~ 3133652 (-) |
G202757 | NA | non-coding | downstream | 218188 | 3113282 ~ 3113978 (-) |
G202792 | NA | non-coding | downstream | 232046 | 3097841 ~ 3100120 (-) |
G202755 | NA | non-coding | downstream | 243466 | 3077993 ~ 3088700 (-) |
G202747 | NA | non-coding | downstream | 359205 | 2966977 ~ 2972961 (-) |
G202842 | NA | non-coding | upstream | 65288 | 3399849 ~ 3407492 (-) |
G202869 | NA | non-coding | upstream | 106266 | 3440827 ~ 3445116 (-) |
G202870 | NA | non-coding | upstream | 110654 | 3445215 ~ 3445658 (-) |
G202877 | NA | non-coding | upstream | 119969 | 3454530 ~ 3458840 (-) |
G202880 | NA | non-coding | upstream | 136926 | 3471487 ~ 3471707 (-) |
CI01000047_01708628_01744282 | BICC1B, BICC1 | other | downstream | 1616649 | 1706068 ~ 1744282 (-) |
G200472 | NA | other | downstream | 2497695 | 833941 ~ 834471 (-) |
CI01000047_00519408_00522108 | PYYB | other | downstream | 2809924 | 519108 ~ 522245 (-) |
G200299 | NA | other | downstream | 3064131 | 267530 ~ 268035 (-) |
G202944 | NA | other | upstream | 463242 | 3985342 ~ 3986402 (-) |
CI01000047_04213574_04213976 | NA | other | upstream | 878848 | 4213409 ~ 4214085 (-) |
CI01000047_04285605_04286644 | COA3A | other | upstream | 944347 | 4285227 ~ 4286694 (-) |
CI01000047_04575184_04576337 | GNGT2B, GNGT2 | other | upstream | 1239774 | 4574335 ~ 4576342 (-) |
G203286 | NA | other | upstream | 1539818 | 4874379 ~ 4876734 (-) |