G202877


Basic Information

Item Value
gene id G202877
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3454530 ~ 3458840 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230230
AGGAGGTGTCCAACGCTCTGCGCGGGGGTGTGGGAGAGCCCTGCTCCGTCACACTCAGCACCTCCAGACTCTTCCTTTCTGGCCGGCAGCGGCCGTGACGGGTTAACATGGGTGAGTCTACACGCTTCCGTGGAGGGTCTATATAGAAAGACAAAACGTTTGCAGTTTGCCTGTAGCACAAACAGCAGAGTATGGCGCTAGCAACGCCAAGGCCGTGGGTTCGATTACCAGGAAAACTGATAAAATGTATACCATGAATGCAATGCACTGTAATTTTCGGAAAAGTCGCACCGGATCCAATTGCATTGTTGAAAGCAAAAAAAACAAAACATAAGTCACATTTTATCATTACATTCAGAATAATGTCAAATACTGGTAAACCAAAACAAAATGTTTACAAACATTATAAACACTATAAACATTTTTCATTCCCCTCACTAAATAAAATCAACATAAATTGAGCTGTTTAACTTTTTATGTTTAGCTGACTGCATTTTAGTTTGATGATGAATAGGCTGCAATGTAAAGTTAGCAATGCTAAAACCAATAAGTTGTGTGCACTTTGCGTTCTTGATATTAATTACATTATTTAAAGTGAGTTTAGAGTTGCTTAGATATTTGAATCAACAATGGAGTTTAAAAAATACGACCGATGGGCCGACAACGAGGTTCAGGCTTTATTAAGCTTATATGCAGAGGACGAAATCCAGCGGGAACTGTAAAGTCAGGCGCAGTCCTACATCACCAGACTTATCTTCATGGTACTTTAGAATGCGATGGAAATGCAGACAGCAACAGGTCTGTGGGGAAAAAGTTCCTAGGACAAATTGTTCCAGGTAATTTCAGTGGAAACGTGGCTATGGTTTGACATGAATACCTGTAACTTAAAATTATGCTAATTTGTAGACCATAGAGACAGTGACTAACAGATGCTGACCATTAGTTAAACTGTCAAAAACATAGGATTCTATAAACCATACCTACTTTATTTAACCCTTCATTTAACTGTGTTAATGAACAATCCAGGGGAAAAGACACAAACCGACGTCATTTCTGGGAGGAAGATCCTCATCCTCATAGCTGGGATAGCGCTCTTTACGGTCTAATAGGAGATAATAGATCATCTTCTCTTGGTTATCTCTAAGGAAAGGAGCAAGATAAATAATAAAAATGTTAACAATCAGTAGTTTTCTGGAGAAAATGTGCATGGTGTTTGCACTCACTCTTCACACTGCAAGTCTTGGGCCAGTTTAACCCGGTCCCTGAAACACCCTAGAGAATACATGCTGTCCAGCACATCAGGGTCCAGCTCTGTCAGAGACATGATTCGACCCATACACACACGCCTCGGGGGCGGCTGCTCCGGACACGGCTCATTGCGTCCAGCTCTTGATCACACACAAACAAACACACATACGAATGTGAGCTGCTTGCACAAATCATCTGCGATTTTGCCAGTTGTGAAAGAGACAAGATGAAATCATTTAAAAAGAAATAGAGATCTATTCAAAAAATACAGCCATAAACACATACATAATATGCTTTAACTACATCTTGACTACAGTGAGAGTGAGAATATAAATAATCAATAATATAAATAATCAATACTTACTGATACCAGGCATGTTTCTGGATGGCCTCTAGCTGCAGGGGAAGGACAACAGATGGTGTAATTAGTAAAATCTGTTGACAGGCAGATGGTGCTATAACTCGAGTAGTTTTGTAGTGAAGATCACCTAAACCGAGACCAAGTCAAGTCCAAGACCAGTGTGTGTTGAGACCAAGACAAGACCAAGACTTTAAGGAGTTGAGAGAAAGACAAGACCAAGACAAGTGTGTGTTAAGACCAAGACAAGACCAAAACCAGTGTGTGTTGAGACCAAGACAAGACAAAGACTTGAGGGGTTGAGACCAAGACAAGCCCAAGACCAGTGCGTGTTGAGACCAAGACAAGACCAAGACATTGAGGGGTCGAGACTAAGACAAAGACCAGTGTGTGTTGAGACAGAGACAAGACCAAGACTTTGATGGGTTGAGACCAAGACAAGGCCAAGACCAGTGTATGTTGAGACCAAGACAAAAACCAAGACTTTAAGGGGTTGAGACAAAGACAAGAACAAGACTTTGAGGGGTTGAGACCAAGACAAGACCAGTACTTTGAAGGGTTGAGACAAAGACAAGACCTAGACTTTTAGAGGTTGAGACCAAGACAAGATCAAGACCAGTGTGTGTTGAGACCAAGACAAGGCCAAGACCAGTCTGTGTTGAGACCAAGACAAAACCAAGACTTTAAGGGGTTGAGACAAAGACAAGAACAAGACTTTGAGGGGTTGAGACCAAGACAAGACCAAGACTTTGAGAGGTTGAGACCAAGAAAAGACCAAGACCAGTGTATGTTGAGACCAAGACCAAGACTTTGAGGGGTTGACACCAAGACAAGATCAAGACTTTGAGAGGTTGAGACCAAGATAAGACTAAGACCAGTGTGTATTGAGACCAAGACAAGACTAAGAAATTAATGAATCAAATTAGAAATAAGTTATTGATAGCATTTGTAAGTTATTTAAAGCAGGAAGTTTAACATCCAATCACATTAATGATGTTAACAAAAAAATCAGACAATGCACCGGCAATTTAGTGATATCCTCTCAGTTGTAGGCCTAGTCTTAACCGGTCTTGAGATAAATTCCTGAGTCTCCTTAGTCTGAGACGATGACAAAAAAATGGTTTTGAGTCCAAAACCAGTCTCAAATACTACAACACTACATTGAAGTAAATGTACAAGTGTAACTACAAGTATGCTTATTCAGAGTTCACAGTACACCCTCACCGTGAGTCTTTTTTCAGGGTTGACCTCGATCATGCCCCGCAGCAGAGCCTGGCAGTCGGGTGGGATGAAATGGGGCATGTGGAACACTCCACTCTTCACCTTCTCCAGCAGCTGCCGCAGGTTATCGTGGTCGAAGGGCAGTGCGCCCTGTGGACAGCAGACAGGAAGATCCACATACATAGAGACAGATGGTAGTGACATGCAAGGAGTGTTTCAGTTATTTGCTTAACAGCCTTTGAGCTAAAGATGAGTAATAGGTGATAAGTGAGGAAAAGTAAAATGCTCTCAGAGAAGCTCTCCTTAAAGCCGAAGCAATTTCCTCACCACTAGCAGAGCGAAGAGAATGACTCCACAGCTCCATACATCAGCCCGTCGACCGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230230 True 3212 lncRNA 0.42 3 3454530 3458840

Neighbor

gene id symbol gene type direction distance location
CI01000047_03412414_03435209 KANSL1A coding downstream 18347 3412398 ~ 3436183 (-)
CI01000047_03321589_03328761 GHRHR2 coding downstream 125769 3319692 ~ 3328761 (-)
CI01000047_03271413_03302291 SCN4AA coding downstream 152159 3269915 ~ 3302371 (-)
CI01000047_03258353_03261127 NA coding downstream 192705 3258353 ~ 3261825 (-)
CI01000047_03223945_03241971 NA coding downstream 211814 3223623 ~ 3242716 (-)
CI01000047_03514753_03523245 NA coding upstream 55611 3514451 ~ 3523245 (-)
CI01000047_03689400_03699969 NA coding upstream 230560 3689400 ~ 3699969 (-)
CI01000047_03713156_03716003 NA coding upstream 254316 3713156 ~ 3716003 (-)
CI01000047_03741720_03750331 MAPK7 coding upstream 282230 3741070 ~ 3750375 (-)
CI01000047_03785018_03800982 NA coding upstream 325902 3784742 ~ 3801004 (-)
G202870 NA non-coding downstream 8872 3445215 ~ 3445658 (-)
G202869 NA non-coding downstream 9414 3440827 ~ 3445116 (-)
G202844 NA non-coding downstream 21901 3332850 ~ 3432629 (-)
G202842 NA non-coding downstream 47038 3399849 ~ 3407492 (-)
G202847 NA non-coding downstream 119969 3332166 ~ 3334561 (-)
G202880 NA non-coding upstream 12647 3471487 ~ 3471707 (-)
G202840 NA non-coding upstream 48081 3506921 ~ 3509108 (-)
G202894 NA non-coding upstream 81551 3540391 ~ 3596078 (-)
G202911 NA non-coding upstream 141500 3600340 ~ 3602562 (-)
G202900 NA non-coding upstream 158629 3617469 ~ 3625869 (-)
G202733 NA other downstream 320878 3132313 ~ 3133652 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 1739013 1706068 ~ 1744282 (-)
G200472 NA other downstream 2620059 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 2932288 519108 ~ 522245 (-)
G200299 NA other downstream 3186495 267530 ~ 268035 (-)
G202944 NA other upstream 338963 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 754569 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 820068 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 1115495 4574335 ~ 4576342 (-)
G203286 NA other upstream 1415539 4874379 ~ 4876734 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110521020 LOC107658484 misc NC_050570.1 CM025857.1 46161172 ~ 46190655 (+)