G202894


Basic Information

Item Value
gene id G202894
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3540391 ~ 3596078 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230252
CACCTCATAAAGGCTAATGCGGCATTTCTTATTGCTGAACTCGTTCTTGCGCTCATTCAGGATCTGCTGCAGCAGTTTGCCGGCCTGGCAGTTGTCAGAGATGGAGTTATAAAGATCCTCCAGTTGGCCGTAAGTCAGGTAGCTCAAAATGTTCAGACCGTGGTCAATGAAGAGACGCACAAACTGTGGTTTATTGTTCATCAGCGCGTCAGTCATGGAATCTTTCAGATCGTCATACTTCCAGTCGATGTTTCCATTGAAGAGTTCACTCTTGGCAATGTCCACTCTGTTCCATGTTACAGCAAGCCTCAACTCATCAGCATAGGGATTAGTAAAGCCCAAAACGTGTTTTTTACTCGCTTGAACAAGCACTTTAAGCATCACAGTGTCAAAATCATCCGCTCCTTCCTGTTCCGCGTTATAAATGCAGATGAGGTCTTTGTTTTGGTAGACGCTTAAAACCTTGTCAACAAGTTTGTCCATCTCTTGCTCTGAAGGAAAGTATTTTATTACTTTCTCCGCCAATCGTTCTCTAAGCTCCATGTTGTGAGTCCCTTCCTCCTTCTCTGCTCCTCCAGTTGAGGTCATCGGTGCAGATTGCACGTTCTCCATGATGTCGCACACAAGATTGGCAAGCCCCCCCGAACCAGCCAGGACCAACCAGGGCATTGAATTCTTCAGAGAGATATCTAATGCCTCCAACATTGACGCTTCTCCAGATATCAGCATATTCAGAACAGGAATGTCAAAGCTTGCACTGTCTGTGCGCTGACGTGAAATGTAATCCTCCAGACGGGCTATGAAGCTGACCTCACCACCTTTACGCCCTATGGTCCCATCATCCACCAGAAGGAAAGCCTTGTAGTTATTATCCAGAGAGCAAGAGTCACGCGCTGCATTTTTGACTAAATACTTTGCGGGGAAACTTCCCTCAGGGTTGACGAGCTGTTGGTGATCTTTTACCAGGCCCCAGGGAGCAATGCCAATGAGAACCACTTTACTGAGAGTGACAGAAGACGTTGCGGTGGCATAATCTCTCACAGCTTCTCCTATACTCCTGCCGAGGCCTTCCTTCAACCCCCTACTTATGATCCATGCTCCTGTGCTCTGTGCAGCTTTAACCAGCCCCTGCCTCAGCACCTCTCGGACCCAGGTCTTGACCTCTGACCTTTTCTCACCACCAAACACTGACACCACCAGGTTGGGATGTGCCAGTTTCCAGTGTTCTCTCATGACATTGAAGACCCTGGAAGGATCTGTGGTGCTGGAGAGACGCAAAAAATAGCTGTGTCTCTTGCCGGCCCCAGCGAACTCCAGCTCTCCATAGGCATCTGTGGGCTGTTCGCAGGAGTGCTGTGCACTGTCCCAGTGACTGACCATGGCTGTGCTGAAGTTATCGCCCAGGGCTCCTGAGGGGTGCGTGTCTCGCGTGGACCCACACTGACACAGACCGCCATTGCTGAAAGAGTCCTCCACAAATGTTGTGCACACTCTCTTTTTAAAGAAATGTGGAATCCAGCTCACATCTCTTTTCGGCATCACGGCCACTCCACCGTATTCAATGTCCTTTTGATTCATCTTGGTTTGTTTATGGACTTTACGAAGTCGCTGTTTGTAGGAAGCTCCAATTCAAAGCGTTCTGCAGCAGCGCGTAATGTCCATGCCATCCGTGAACGAGGATCGCTAGAGACTGTGGAGTTACCTGAAAAATCAGGTGTAACCAGCGCGCGCA
>TU230255
CCTCCCTGTTCCGCGTCATAAATGGAGATGAGGTCTTTGTTTTGGTAGATGCTCAAAACCTTGTCAACAAGTTTGTCCATCTCTTGCTCTGAAGGAAAGTATTTCATTACTTTCTCCGCCAATCGTTCTCTAAGCTCCGTGTTGTGAGTCCCTTCCTCCTTCTCTGCTCCTCCAGTTGAGGTCATCGGTGCAGATTGCACGTTCTCCATGATGTCGCACACAAGATTGGCAAGCCCCCCCGAACCAGCCAGGACCAACCAGGGCATTGAATTCTTCAGAGAGATATCTAATGCCTCCAACATTGACGCTTCTCCAGATATCAGCATATTCAGAACAGGAATGTCAAAGCTTGCACTGTCTGTGCGCTGACGTGAAATGTAATCCTCCAGACGGGCTATGAAGCTGACCTCACCACCTTTACGCCCTATGGTCCCATCATCCACCAGAAGGAAAGCCTTGTAGTTATTATCCAGAGAGCAAGAGTCACGCGCTGCATTTTTGACTAAATACTTTGCGGGGAAACTTCCCTCAGGGTTGACGAGCTGTTGGTGATCTTTTACCAGGCCCCAGGGAGCAATGCCAATGAGAACCACTTTACTGAGAGTGACAGAAGACGTTGCGGTGGCATAATCTCTCACAGCTTCTCCTATACTCCTGCCGAGGCCTTCCTTCAACCCCCTACTTATGATCCATGCTCCTGTGCTCTGTGCAGCTTTAACCAGCCCCTGCCTCAGCACCTCTCGGACCCAGGTCTTGACCTCTGACCTTTTCTCACCACCAAACACTGACACCACCAGGTTGGGATGTGCCAGTTTCCAGTGTTCTCTCATGACATTGAAGACCCTGGAAGGATCTGTGGTGCTGGAGAGACGCAAAAAATAGCTGTGTCTCTTGCCGGCCCCAGCGAACTCCAGCTCTCCATAGGCATCTGTGGGCTGTTCGCAGGAGTGCTGTGCACTGTCCCAGTGACTGACCATGGCTGTGCTGAAGTTATCGCCCAGGGCTCCTGAGGGGTGCGTGTCTCGCGTGGACCCACACTGACACAGACCGCCATTGCTACAAAACAACAGACGGAGGATCTGTCCTACAGAAGGAATCTAACACAAGAGATACTGAATACTCACCAAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230252 False 1732 lncRNA 0.49 12 3540391 3596078
TU230255 True 1130 lncRNA 0.51 7 3542234 3551219

Neighbor

gene id symbol gene type direction distance location
CI01000047_03514753_03523245 NA coding downstream 17146 3514451 ~ 3523245 (-)
CI01000047_03412414_03435209 KANSL1A coding downstream 104208 3412398 ~ 3436183 (-)
CI01000047_03321589_03328761 GHRHR2 coding downstream 211630 3319692 ~ 3328761 (-)
CI01000047_03271413_03302291 SCN4AA coding downstream 238020 3269915 ~ 3302371 (-)
CI01000047_03258353_03261127 NA coding downstream 278566 3258353 ~ 3261825 (-)
CI01000047_03689400_03699969 NA coding upstream 93322 3689400 ~ 3699969 (-)
CI01000047_03713156_03716003 NA coding upstream 117078 3713156 ~ 3716003 (-)
CI01000047_03741720_03750331 MAPK7 coding upstream 144992 3741070 ~ 3750375 (-)
CI01000047_03785018_03800982 NA coding upstream 188664 3784742 ~ 3801004 (-)
CI01000047_03855710_03868781 NA coding upstream 259465 3855543 ~ 3869804 (-)
G202840 NA non-coding downstream 31283 3506921 ~ 3509108 (-)
G202880 NA non-coding downstream 68684 3471487 ~ 3471707 (-)
G202877 NA non-coding downstream 81551 3454530 ~ 3458840 (-)
G202870 NA non-coding downstream 94733 3445215 ~ 3445658 (-)
G202869 NA non-coding downstream 95275 3440827 ~ 3445116 (-)
G202911 NA non-coding upstream 4262 3600340 ~ 3602562 (-)
G202900 NA non-coding upstream 21391 3617469 ~ 3625869 (-)
G202931 NA non-coding upstream 75298 3671376 ~ 3674642 (-)
G202932 NA non-coding upstream 79313 3675391 ~ 3675650 (-)
G202942 NA non-coding upstream 89710 3685788 ~ 3687303 (-)
G202733 NA other downstream 406739 3132313 ~ 3133652 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 1824874 1706068 ~ 1744282 (-)
G200472 NA other downstream 2705920 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 3018149 519108 ~ 522245 (-)
G200299 NA other downstream 3272356 267530 ~ 268035 (-)
G202944 NA other upstream 201725 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 617331 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 682830 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 978257 4574335 ~ 4576342 (-)
G203286 NA other upstream 1278301 4874379 ~ 4876734 (-)

Expression


Co-expression Network