G202942


Basic Information

Item Value
gene id G202942
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3685788 ~ 3687303 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230328
ATGAACATCTTGGATGACATGGGGGTGAGTAAATTATCAGGAAATTTTTAATTCAGATGTGAACTAATCTTTTAAGGGCCACTGTCCTGCTCCACTGTTCAGCTCCAACCCTAGTTAAACACACCTGAACCAGCTAATCAAGGTCCTCAGGATTACTAGAAACTTCCAGGCAGGTGTTTTGGAGCTAAACTCTGCAGGACAGTAGTGAAGTTTAACACACGAGGGGGCCTCATTTATTAAAACGTTCATACGCACAGATTTGAACTTAGAATGCGCGTATGCTAAAATCCACACCAACGTTCAGTTTTATAAAAATGGACTTTGGCAGAGAGTTGGGGTGCTGCAGGTGTTTGGAAATCTAAGCAATTCTTGTCGCTTGTCGTTCTCAAGTAAAGGATATGGACATTGACTAATGCTATTTTATATATTAATGACAGTAATTAGGCGGCGTTTACAAGGCAGAGATCTGAAACCATTCACAATTTCAAGATCATTTGCGATTTATAGATCTGGAAGAGAGGCGTAAGCACTTTTTTTTTTTTTTTTTGAGCGTACGTTCATTCTTTGAATCACACTTACGCATATTTGAGAAATGATCGTCAGATCAAATGTAGGACTGTTTCTACACAACAATTTATAAATGAGCCCCCTCATCTAGGGCCTTGCTTAAATTCACAGGGCCTGGAACCTGTTTTGCTGGGACATTTTGATAAAGGTGTATGGATCAGTGGCATGATGCTTTTTTGCCTGGATCTAAATTTTTATTAAAACATTCATACAAATGCAATTCATAAAAGTACAATAATAATACAATAATATATGAGTTTTATTCTTTTAATGAGTTACATTCATTAAAAGAATAAAACTCATATATTATTGTATTATTTCTATGAGCAACAACAACAAATTCATTACTTATTTGGAAAACTTTTGTCTTGCAATTCAAAATCATGTGATGTGCAGAAACACAGAAAATGTGTCATGGTCAATTAAGTTTCTTAAAATATCAGATAATTTGAGCTTTTTTATGACAAGGCAAGGTAAATGTGTTTTAAACAAGATTTTTCCTTTTACTTTGTTATCTGGCAGCACAGCTCACCTCGCCCCGTCCAGATTTATTGCTAATGTACTTAATAAAAGCATTTTTCATTCCAGACATCAGACCCAGTGTTTAGTATCAGTGAGATAATATTACAGTAGGTTACACTTTCTTTTGATGGTCCTCTTTATACATTCTGTGTACTAACTAATACTCTAATGAGAGTTAACGTTACTTATAGCCAACATACATGTCTAAAAGGGGAGCATCAAAATAAAGTGTAAAGTTTAAAATATTTTAATCAGTTTTTATTTTTGTATTATCTGTTTTCATTTTAAATTTAAATTTTTAGTAATTGTGTATTTGTCATTTTTATTAATTACTGTTTTTTTTAATATGTCTAAATCATTTTTAATTATATTTGTTTTAAGTTTTAGTTATACATCAAGTGAGAAATGCTGCTTTGGCAACTGGATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU230328 True 1516 lncRNA 0.33 1 3685788 3687303

Neighbor

gene id symbol gene type direction distance location
CI01000047_03514753_03523245 NA coding downstream 162543 3514451 ~ 3523245 (-)
CI01000047_03412414_03435209 KANSL1A coding downstream 249605 3412398 ~ 3436183 (-)
CI01000047_03321589_03328761 GHRHR2 coding downstream 357027 3319692 ~ 3328761 (-)
CI01000047_03271413_03302291 SCN4AA coding downstream 383417 3269915 ~ 3302371 (-)
CI01000047_03258353_03261127 NA coding downstream 423963 3258353 ~ 3261825 (-)
CI01000047_03689400_03699969 NA coding upstream 2097 3689400 ~ 3699969 (-)
CI01000047_03713156_03716003 NA coding upstream 25853 3713156 ~ 3716003 (-)
CI01000047_03741720_03750331 MAPK7 coding upstream 53767 3741070 ~ 3750375 (-)
CI01000047_03785018_03800982 NA coding upstream 97439 3784742 ~ 3801004 (-)
CI01000047_03855710_03868781 NA coding upstream 168240 3855543 ~ 3869804 (-)
G202932 NA non-coding downstream 10138 3675391 ~ 3675650 (-)
G202931 NA non-coding downstream 11146 3671376 ~ 3674642 (-)
G202900 NA non-coding downstream 59919 3617469 ~ 3625869 (-)
G202911 NA non-coding downstream 83226 3600340 ~ 3602562 (-)
G202894 NA non-coding downstream 89710 3540391 ~ 3596078 (-)
G202949 NA non-coding upstream 223 3687526 ~ 3688562 (-)
G203012 NA non-coding upstream 32814 3720117 ~ 3720493 (-)
G203010 NA non-coding upstream 33399 3720702 ~ 3721356 (-)
G202952 NA non-coding upstream 42659 3729962 ~ 3739740 (-)
G202938 NA non-coding upstream 64809 3752112 ~ 3752831 (-)
G202733 NA other downstream 552136 3132313 ~ 3133652 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 1970271 1706068 ~ 1744282 (-)
G200472 NA other downstream 2851317 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 3163546 519108 ~ 522245 (-)
G200299 NA other downstream 3417753 267530 ~ 268035 (-)
G202944 NA other upstream 110500 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 526106 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 591605 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 887032 4574335 ~ 4576342 (-)
G203286 NA other upstream 1187076 4874379 ~ 4876734 (-)

Expression


Co-expression Network