Gene
RNA
| Item | Value |
|---|---|
| gene id | G202949 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000047 |
| NCBI id | null |
| chromosome length | 7523058 |
| location | 3687526 ~ 3688562 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU230343 | True | 1037 | lncRNA | 0.37 | 1 | 3687526 | 3688562 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000047_03514753_03523245 | NA | coding | downstream | 164281 | 3514451 ~ 3523245 (-) |
| CI01000047_03412414_03435209 | KANSL1A | coding | downstream | 251343 | 3412398 ~ 3436183 (-) |
| CI01000047_03321589_03328761 | GHRHR2 | coding | downstream | 358765 | 3319692 ~ 3328761 (-) |
| CI01000047_03271413_03302291 | SCN4AA | coding | downstream | 385155 | 3269915 ~ 3302371 (-) |
| CI01000047_03258353_03261127 | NA | coding | downstream | 425701 | 3258353 ~ 3261825 (-) |
| CI01000047_03689400_03699969 | NA | coding | upstream | 838 | 3689400 ~ 3699969 (-) |
| CI01000047_03713156_03716003 | NA | coding | upstream | 24594 | 3713156 ~ 3716003 (-) |
| CI01000047_03741720_03750331 | MAPK7 | coding | upstream | 52508 | 3741070 ~ 3750375 (-) |
| CI01000047_03785018_03800982 | NA | coding | upstream | 96180 | 3784742 ~ 3801004 (-) |
| CI01000047_03855710_03868781 | NA | coding | upstream | 166981 | 3855543 ~ 3869804 (-) |
| G202942 | NA | non-coding | downstream | 223 | 3685788 ~ 3687303 (-) |
| G202932 | NA | non-coding | downstream | 11876 | 3675391 ~ 3675650 (-) |
| G202931 | NA | non-coding | downstream | 12884 | 3671376 ~ 3674642 (-) |
| G202900 | NA | non-coding | downstream | 61657 | 3617469 ~ 3625869 (-) |
| G202911 | NA | non-coding | downstream | 84964 | 3600340 ~ 3602562 (-) |
| G203012 | NA | non-coding | upstream | 31555 | 3720117 ~ 3720493 (-) |
| G203010 | NA | non-coding | upstream | 32140 | 3720702 ~ 3721356 (-) |
| G202952 | NA | non-coding | upstream | 41400 | 3729962 ~ 3739740 (-) |
| G202938 | NA | non-coding | upstream | 63550 | 3752112 ~ 3752831 (-) |
| G202946 | NA | non-coding | upstream | 66225 | 3754787 ~ 3755783 (-) |
| G202733 | NA | other | downstream | 553874 | 3132313 ~ 3133652 (-) |
| CI01000047_01708628_01744282 | BICC1B, BICC1 | other | downstream | 1972009 | 1706068 ~ 1744282 (-) |
| G200472 | NA | other | downstream | 2853055 | 833941 ~ 834471 (-) |
| CI01000047_00519408_00522108 | PYYB | other | downstream | 3165284 | 519108 ~ 522245 (-) |
| G200299 | NA | other | downstream | 3419491 | 267530 ~ 268035 (-) |
| G202944 | NA | other | upstream | 109241 | 3985342 ~ 3986402 (-) |
| CI01000047_04213574_04213976 | NA | other | upstream | 524847 | 4213409 ~ 4214085 (-) |
| CI01000047_04285605_04286644 | COA3A | other | upstream | 590346 | 4285227 ~ 4286694 (-) |
| CI01000047_04575184_04576337 | GNGT2B, GNGT2 | other | upstream | 885773 | 4574335 ~ 4576342 (-) |
| G203286 | NA | other | upstream | 1185817 | 4874379 ~ 4876734 (-) |
