G202938


Basic Information

Item Value
gene id G202938
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3752112 ~ 3752831 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230324
GCAACACCAAACACTGCATTTTTATACCTATAGATTTTCACACGGGGGTTTGTTCATATATCATTTGACTAATTTTATGCAACATTTTATTCCTATTTTTTTCTGGCTGTATTCAAATATGTGCAGATTTAATTAGATAACGCCTTATTTGCATATTTAAACATACCATTTTAGAAAAGGTGAAACAGAAAAAAATGTTTGTGACTCTTAATGTTATCAGTCAACTGGGGAAATATGGAAATATGGTGTAGGCTACTGTATTCACATTAATTATAGCCTAAGTTAGATGCATGAAAACTGCCACGACTGAAATGAACGCATTTACCTGGAGGTGAAGACCTTAGAGCAGCTCACGGAATGGCCCAGATCGCACATCGCGCGATATTCGGGATCATTCTCCCGGGAAAGTTCGACGTATAGCGCGTAAACCGACAGAACTAAACCCAGAAAACAGAGGATGAGGCGAACGCTATATTCCCATTTAGGAACTCCAGTAGCTGAATGGCTCGAGGACATTGCAGTGACAGTGTCAAGAGGTTTTATAACAAATTACCTAATTTACAAAAGCCTGTTTTGTAGACTTGTAGACTAAAGTTGCTACTCTTACGTGCAACGTGTAACTGTAGAATATGTAAGTTCGACTCCCACCTTGTCACAATATACTGCAACGTGGAAAAGCCTGAGGCAAGAGCTGTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU230324 True 697 lncRNA 0.39 2 3752112 3752831

Neighbor

gene id symbol gene type direction distance location
CI01000047_03741720_03750331 MAPK7 coding downstream 1737 3741070 ~ 3750375 (-)
CI01000047_03713156_03716003 NA coding downstream 36109 3713156 ~ 3716003 (-)
CI01000047_03689400_03699969 NA coding downstream 52143 3689400 ~ 3699969 (-)
CI01000047_03514753_03523245 NA coding downstream 228867 3514451 ~ 3523245 (-)
CI01000047_03412414_03435209 KANSL1A coding downstream 315929 3412398 ~ 3436183 (-)
CI01000047_03785018_03800982 NA coding upstream 31911 3784742 ~ 3801004 (-)
CI01000047_03855710_03868781 NA coding upstream 102712 3855543 ~ 3869804 (-)
CI01000047_03873674_03934985 NA coding upstream 120628 3873459 ~ 3935129 (-)
CI01000047_03947036_03979744 NA coding upstream 193475 3946306 ~ 3980325 (-)
CI01000047_04022011_04032483 NA coding upstream 268914 4020885 ~ 4032666 (-)
G202952 NA non-coding downstream 12372 3729962 ~ 3739740 (-)
G203010 NA non-coding downstream 30756 3720702 ~ 3721356 (-)
G203012 NA non-coding downstream 31619 3720117 ~ 3720493 (-)
G202949 NA non-coding downstream 63550 3687526 ~ 3688562 (-)
G202942 NA non-coding downstream 64809 3685788 ~ 3687303 (-)
G202946 NA non-coding upstream 1956 3754787 ~ 3755783 (-)
G203017 NA non-coding upstream 3338 3756169 ~ 3756399 (-)
G203021 NA non-coding upstream 13796 3766627 ~ 3830452 (-)
G203022 NA non-coding upstream 21672 3774503 ~ 3838228 (-)
G203025 NA non-coding upstream 24498 3777329 ~ 3844054 (-)
G202733 NA other downstream 618460 3132313 ~ 3133652 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 2036595 1706068 ~ 1744282 (-)
G200472 NA other downstream 2917641 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 3229870 519108 ~ 522245 (-)
G200299 NA other downstream 3484077 267530 ~ 268035 (-)
G202944 NA other upstream 44972 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 460578 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 526077 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 821504 4574335 ~ 4576342 (-)
G203286 NA other upstream 1121548 4874379 ~ 4876734 (-)

Expression


Co-expression Network