Gene
RNA
| Item | Value |
|---|---|
| gene id | G202946 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000047 |
| NCBI id | null |
| chromosome length | 7523058 |
| location | 3754787 ~ 3755783 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU230339 | True | 977 | lncRNA | 0.34 | 2 | 3754787 | 3755783 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000047_03741720_03750331 | MAPK7 | coding | downstream | 4412 | 3741070 ~ 3750375 (-) |
| CI01000047_03713156_03716003 | NA | coding | downstream | 38784 | 3713156 ~ 3716003 (-) |
| CI01000047_03689400_03699969 | NA | coding | downstream | 54818 | 3689400 ~ 3699969 (-) |
| CI01000047_03514753_03523245 | NA | coding | downstream | 231542 | 3514451 ~ 3523245 (-) |
| CI01000047_03412414_03435209 | KANSL1A | coding | downstream | 318604 | 3412398 ~ 3436183 (-) |
| CI01000047_03785018_03800982 | NA | coding | upstream | 28959 | 3784742 ~ 3801004 (-) |
| CI01000047_03855710_03868781 | NA | coding | upstream | 99760 | 3855543 ~ 3869804 (-) |
| CI01000047_03873674_03934985 | NA | coding | upstream | 117676 | 3873459 ~ 3935129 (-) |
| CI01000047_03947036_03979744 | NA | coding | upstream | 190523 | 3946306 ~ 3980325 (-) |
| CI01000047_04022011_04032483 | NA | coding | upstream | 265962 | 4020885 ~ 4032666 (-) |
| G202938 | NA | non-coding | downstream | 1956 | 3752112 ~ 3752831 (-) |
| G202952 | NA | non-coding | downstream | 15047 | 3729962 ~ 3739740 (-) |
| G203010 | NA | non-coding | downstream | 33431 | 3720702 ~ 3721356 (-) |
| G203012 | NA | non-coding | downstream | 34294 | 3720117 ~ 3720493 (-) |
| G202949 | NA | non-coding | downstream | 66225 | 3687526 ~ 3688562 (-) |
| G203017 | NA | non-coding | upstream | 386 | 3756169 ~ 3756399 (-) |
| G203021 | NA | non-coding | upstream | 10844 | 3766627 ~ 3830452 (-) |
| G203022 | NA | non-coding | upstream | 18720 | 3774503 ~ 3838228 (-) |
| G203025 | NA | non-coding | upstream | 21546 | 3777329 ~ 3844054 (-) |
| G202998 | NA | non-coding | upstream | 40717 | 3796500 ~ 3905595 (-) |
| G202733 | NA | other | downstream | 621135 | 3132313 ~ 3133652 (-) |
| CI01000047_01708628_01744282 | BICC1B, BICC1 | other | downstream | 2039270 | 1706068 ~ 1744282 (-) |
| G200472 | NA | other | downstream | 2920316 | 833941 ~ 834471 (-) |
| CI01000047_00519408_00522108 | PYYB | other | downstream | 3232545 | 519108 ~ 522245 (-) |
| G200299 | NA | other | downstream | 3486752 | 267530 ~ 268035 (-) |
| G202944 | NA | other | upstream | 42020 | 3985342 ~ 3986402 (-) |
| CI01000047_04213574_04213976 | NA | other | upstream | 457626 | 4213409 ~ 4214085 (-) |
| CI01000047_04285605_04286644 | COA3A | other | upstream | 523125 | 4285227 ~ 4286694 (-) |
| CI01000047_04575184_04576337 | GNGT2B, GNGT2 | other | upstream | 818552 | 4574335 ~ 4576342 (-) |
| G203286 | NA | other | upstream | 1118596 | 4874379 ~ 4876734 (-) |
