G203021


Basic Information

Item Value
gene id G203021
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3766627 ~ 3830452 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230418
TACCTTCAAAGCCGGTTTCTCCCCATCCAGTGGACCAGCAGGTGGTGCCGTTGTGAAAGACACTGTCATTAGCAGCCAGGCAGATTGGGCTGATGTAGCTGGTAAAGTTCACTGGCTCACTCAATCTCAGCAAGGCGATGTCATTGGTGAACTGATACGGGTCGTAGTCTGGATGTTTAATGATGGATTGGACTCCTCGACTGACCTCGTTTGGGTTAGAGACTGAAATGTTTTGGCTCTGTCTGCCCAGATAAACAGTCCAGTAACTGTCTGGGGGTGAGAAGGAAACACAGTGAGCTGCAGTGAGCACCCATTCGTGGCTGATGAGGGATCCTCCACAGATGTAATAGTCAAAAAAGTGTAGACTGACA
>TU230417
TACCTTCAAAGCCGGTTTCTCCCCATCCAGTGGACCAGCAGGTGGTGCCGTTGTGAAAGACACTGTCATTAGCAGCCAGGCAGATTGGGCTGATGTAGCTGGTAAAGTTCACTGGCTCACTCAATCTCAGCAAGGCGATGTCATTGGTGAACTGATACGGGTCGTAGTCTGGATGTTTAATGATGGATTGGACTCCTCGACTGACCTCGTTTGGGTTAGAGACTGAAATGTTTTGGCTCTGTCTGCCCAGATAAACAGTCCAGTAACTGTCTGGGGGTCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU230418 False 371 lncRNA 0.49 3 3766627 3830452
TU230417 True 281 lncRNA 0.50 2 3766825 3830452

Neighbor

gene id symbol gene type direction distance location
CI01000047_03741720_03750331 MAPK7 coding downstream 16252 3741070 ~ 3750375 (-)
CI01000047_03713156_03716003 NA coding downstream 50624 3713156 ~ 3716003 (-)
CI01000047_03689400_03699969 NA coding downstream 66658 3689400 ~ 3699969 (-)
CI01000047_03514753_03523245 NA coding downstream 243382 3514451 ~ 3523245 (-)
CI01000047_03412414_03435209 KANSL1A coding downstream 330444 3412398 ~ 3436183 (-)
CI01000047_03855710_03868781 NA coding upstream 25091 3855543 ~ 3869804 (-)
CI01000047_03873674_03934985 NA coding upstream 43007 3873459 ~ 3935129 (-)
CI01000047_03947036_03979744 NA coding upstream 115854 3946306 ~ 3980325 (-)
CI01000047_04022011_04032483 NA coding upstream 191293 4020885 ~ 4032666 (-)
CI01000047_04105620_04111019 NA coding upstream 274971 4105423 ~ 4111184 (-)
G203017 NA non-coding downstream 10228 3756169 ~ 3756399 (-)
G202946 NA non-coding downstream 10844 3754787 ~ 3755783 (-)
G202938 NA non-coding downstream 13796 3752112 ~ 3752831 (-)
G202952 NA non-coding downstream 26887 3729962 ~ 3739740 (-)
G203010 NA non-coding downstream 45271 3720702 ~ 3721356 (-)
G203041 NA non-coding upstream 34064 3864516 ~ 3907080 (-)
G203042 NA non-coding upstream 35711 3866163 ~ 3866531 (-)
G203046 NA non-coding upstream 50426 3880878 ~ 3910785 (-)
G203051 NA non-coding upstream 75170 3905622 ~ 3906224 (-)
G202733 NA other downstream 632975 3132313 ~ 3133652 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 2051110 1706068 ~ 1744282 (-)
G200472 NA other downstream 2932156 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 3244385 519108 ~ 522245 (-)
G200299 NA other downstream 3498592 267530 ~ 268035 (-)
CI01000047_04213574_04213976 NA other upstream 382957 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 448456 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 743883 4574335 ~ 4576342 (-)
G203286 NA other upstream 1043927 4874379 ~ 4876734 (-)
G203840 NA other upstream 2088056 5918508 ~ 5927344 (-)

Expression


Co-expression Network