Gene
RNA
| Item | Value |
|---|---|
| gene id | G201475 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000047 |
| NCBI id | null |
| chromosome length | 7523058 |
| location | 3794286 ~ 3794790 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU228634 | True | 298 | lncRNA | 0.44 | 3 | 3794286 | 3794790 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000047_03778996_03783444 | NA | coding | upstream | 10842 | 3778996 ~ 3783444 (+) |
| CI01000047_03771908_03778580 | NA | coding | upstream | 15706 | 3771908 ~ 3778580 (+) |
| CI01000047_03760606_03768136 | NA | coding | upstream | 26150 | 3760606 ~ 3768136 (+) |
| CI01000047_03752293_03755079 | VKORC1 | coding | upstream | 39127 | 3750931 ~ 3755159 (+) |
| CI01000047_03730436_03739299 | NA | coding | upstream | 54713 | 3730243 ~ 3739573 (+) |
| CI01000047_03823906_03854710 | NA | coding | downstream | 27356 | 3822146 ~ 3854814 (+) |
| CI01000047_04012371_04020979 | ALDOAA, ALDOA, ALD, ALDOAB | coding | downstream | 217534 | 4012324 ~ 4021255 (+) |
| CI01000047_04040223_04054395 | NA | coding | downstream | 245330 | 4040120 ~ 4054395 (+) |
| CI01000047_04056077_04061495 | NA | coding | downstream | 261287 | 4056077 ~ 4061495 (+) |
| CI01000047_04065102_04071608 | BRAFLDRAFT_264576, BRAFLDRAFT_218264, BRAFLDRAFT_218328, PPP4CB, PPP4C, PPP4CA | coding | downstream | 270312 | 4065102 ~ 4072324 (+) |
| G201462 | NA | non-coding | upstream | 37611 | 3756466 ~ 3756675 (+) |
| G201461 | NA | non-coding | upstream | 52420 | 3741053 ~ 3741866 (+) |
| G201428 | NA | non-coding | upstream | 74512 | 3715514 ~ 3719774 (+) |
| G201386 | NA | non-coding | upstream | 97936 | 3693528 ~ 3696350 (+) |
| G201379 | NA | non-coding | upstream | 105768 | 3687525 ~ 3688518 (+) |
| G201444 | NA | non-coding | downstream | 90265 | 3885055 ~ 3915947 (+) |
| G201439 | NA | non-coding | downstream | 98013 | 3892803 ~ 3921072 (+) |
| G201508 | NA | non-coding | downstream | 112624 | 3907414 ~ 3931682 (+) |
| G201509 | NA | non-coding | downstream | 112818 | 3907608 ~ 3931898 (+) |
| G201520 | NA | non-coding | downstream | 201669 | 3996459 ~ 3997356 (+) |
| G201387 | NA | other | upstream | 92426 | 3696516 ~ 3701860 (+) |
| G201186 | NA | other | upstream | 706099 | 3018705 ~ 3088187 (+) |
| G200076 | NA | other | upstream | 1216289 | 2520596 ~ 2577997 (+) |
| G200003 | NA | other | upstream | 1475324 | 2316863 ~ 2318962 (+) |
| CI01000047_01749606_01752688 | NA | other | upstream | 2041449 | 1749606 ~ 1752688 (+) |
| G201599 | NA | other | downstream | 621023 | 4415813 ~ 4482457 (+) |
| G202382 | NA | other | downstream | 3020927 | 6815717 ~ 6816118 (+) |
