Item | Value |
---|---|
gene id | G203033 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000047 |
NCBI id | null |
chromosome length | 7523058 |
location | 3807354 ~ 3808077 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU230433 | False | 273 | lncRNA | 0.45 | 2 | 3807354 | 3808077 |
TU230432 | True | 270 | lncRNA | 0.43 | 2 | 3807410 | 3808077 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000047_03785018_03800982 | NA | coding | downstream | 6350 | 3784742 ~ 3801004 (-) |
CI01000047_03741720_03750331 | MAPK7 | coding | downstream | 56979 | 3741070 ~ 3750375 (-) |
CI01000047_03713156_03716003 | NA | coding | downstream | 91351 | 3713156 ~ 3716003 (-) |
CI01000047_03689400_03699969 | NA | coding | downstream | 107385 | 3689400 ~ 3699969 (-) |
CI01000047_03514753_03523245 | NA | coding | downstream | 284109 | 3514451 ~ 3523245 (-) |
CI01000047_03855710_03868781 | NA | coding | upstream | 47466 | 3855543 ~ 3869804 (-) |
CI01000047_03873674_03934985 | NA | coding | upstream | 65382 | 3873459 ~ 3935129 (-) |
CI01000047_03947036_03979744 | NA | coding | upstream | 138229 | 3946306 ~ 3980325 (-) |
CI01000047_04022011_04032483 | NA | coding | upstream | 213668 | 4020885 ~ 4032666 (-) |
CI01000047_04105620_04111019 | NA | coding | upstream | 297346 | 4105423 ~ 4111184 (-) |
G203017 | NA | non-coding | downstream | 50955 | 3756169 ~ 3756399 (-) |
G202946 | NA | non-coding | downstream | 51571 | 3754787 ~ 3755783 (-) |
G202938 | NA | non-coding | downstream | 54523 | 3752112 ~ 3752831 (-) |
G202952 | NA | non-coding | downstream | 67614 | 3729962 ~ 3739740 (-) |
G203010 | NA | non-coding | downstream | 85998 | 3720702 ~ 3721356 (-) |
G203041 | NA | non-coding | upstream | 56439 | 3864516 ~ 3907080 (-) |
G203042 | NA | non-coding | upstream | 58086 | 3866163 ~ 3866531 (-) |
G203046 | NA | non-coding | upstream | 72801 | 3880878 ~ 3910785 (-) |
G203051 | NA | non-coding | upstream | 97545 | 3905622 ~ 3906224 (-) |
G202733 | NA | other | downstream | 673702 | 3132313 ~ 3133652 (-) |
CI01000047_01708628_01744282 | BICC1B, BICC1 | other | downstream | 2091837 | 1706068 ~ 1744282 (-) |
G200472 | NA | other | downstream | 2972883 | 833941 ~ 834471 (-) |
CI01000047_00519408_00522108 | PYYB | other | downstream | 3285112 | 519108 ~ 522245 (-) |
G200299 | NA | other | downstream | 3539319 | 267530 ~ 268035 (-) |
CI01000047_04213574_04213976 | NA | other | upstream | 405332 | 4213409 ~ 4214085 (-) |
CI01000047_04285605_04286644 | COA3A | other | upstream | 470831 | 4285227 ~ 4286694 (-) |
CI01000047_04575184_04576337 | GNGT2B, GNGT2 | other | upstream | 766258 | 4574335 ~ 4576342 (-) |
G203286 | NA | other | upstream | 1066302 | 4874379 ~ 4876734 (-) |
G203840 | NA | other | upstream | 2110431 | 5918508 ~ 5927344 (-) |