G201439


Basic Information

Item Value
gene id G201439
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 3892803 ~ 3921072 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU228594
AATTTATTTTAATTTCCTTACCAACAAGTGCCATTTTTAAATATACCAATATTGCAAAAAAAAAAAAAAAAAAGGCAAATTAAACAATATCTTTATATAAAGCAGAAAACATTAAACATCTACACCCAGTGCAAATCCCTATTATGAAAACCTGAAGAAACGTGATAAAAATATAAAATAAAAATAAAAAATAATAAACTATGTAAGCTTGTTTCTGCCACTCAGTAAAAAATAAAAAAGGTAACTGCGAACTTTTATGCCTCACAGTTATGTCTTTTTTTCCTCCGAATTGCGAGTTTATATCTAACAATTATGACTTTTTTTCTCTGAATTGCGAGATATAAACTTGCAATTGCAAATTATAAAGTCAGAATTATGATACAATTGCAATTTTTCCTCAGAACTGGATTTTGTATCTCGCAATTGTAACTTTTTTCTCTGACTTGCAAGTTTGTATTTCGCAATTCAGAGAAAAAAGTTACAAAGTTACAAAAGTTGAAATTACCTTTTGTATTTTTTTATTCCGTGGTGGAAACAAGCTTCCATAGAAAACATCTCAAAAACAATGTGCATGTTAGAAAAAGATCCTCCAATATTTCTAATATTTCTGCTACAGTTCATACTCAGTCATTATCAGTTTTCATAACAAAGAAGGAAGTCAAATATTTATAAATACTTTTGTAACTCGTTGTGCTCACTGATACAAAACAAAACACGATCAGTATCTTATAACTGTTTGAGTGCACATTATTGTGTCATGTTTGGCTCTCCTCCTGCATCGCCCTGCGCCTCCTGCAGCATCTGCTTATACTGGCTTTTGAAGAACCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228594 True 829 lncRNA 0.31 2 3892803 3921072

Neighbor

gene id symbol gene type direction distance location
CI01000047_03823906_03854710 NA coding upstream 37989 3822146 ~ 3854814 (+)
CI01000047_03778996_03783444 NA coding upstream 109359 3778996 ~ 3783444 (+)
CI01000047_03771908_03778580 NA coding upstream 114223 3771908 ~ 3778580 (+)
CI01000047_03760606_03768136 NA coding upstream 124667 3760606 ~ 3768136 (+)
CI01000047_03752293_03755079 VKORC1 coding upstream 137644 3750931 ~ 3755159 (+)
CI01000047_04012371_04020979 ALDOAA, ALDOA, ALD, ALDOAB coding downstream 91252 4012324 ~ 4021255 (+)
CI01000047_04040223_04054395 NA coding downstream 119048 4040120 ~ 4054395 (+)
CI01000047_04056077_04061495 NA coding downstream 135005 4056077 ~ 4061495 (+)
CI01000047_04065102_04071608 BRAFLDRAFT_264576, BRAFLDRAFT_218264, BRAFLDRAFT_218328, PPP4CB, PPP4C, PPP4CA coding downstream 144030 4065102 ~ 4072324 (+)
CI01000047_04075849_04088601 EIF3CL, EIF3C, EIF3C.L coding downstream 154777 4075849 ~ 4088917 (+)
G201475 NA non-coding upstream 98013 3794286 ~ 3794790 (+)
G201462 NA non-coding upstream 136128 3756466 ~ 3756675 (+)
G201461 NA non-coding upstream 150937 3741053 ~ 3741866 (+)
G201428 NA non-coding upstream 173029 3715514 ~ 3719774 (+)
G201386 NA non-coding upstream 196453 3693528 ~ 3696350 (+)
G201520 NA non-coding downstream 75387 3996459 ~ 3997356 (+)
G201526 NA non-coding downstream 141937 4063009 ~ 4064822 (+)
CI01000047_04153298_04179343 TAOK2A, TAOK2, TAOK2B non-coding downstream 251587 4153298 ~ 4182449 (+)
G201555 NA non-coding downstream 365707 4286779 ~ 4349774 (+)
G201581 NA non-coding downstream 381502 4302574 ~ 4305252 (+)
G201387 NA other upstream 190943 3696516 ~ 3701860 (+)
G201186 NA other upstream 804616 3018705 ~ 3088187 (+)
G200076 NA other upstream 1314806 2520596 ~ 2577997 (+)
G200003 NA other upstream 1573841 2316863 ~ 2318962 (+)
CI01000047_01749606_01752688 NA other upstream 2139966 1749606 ~ 1752688 (+)
G201599 NA other downstream 494741 4415813 ~ 4482457 (+)
G202382 NA other downstream 2894645 6815717 ~ 6816118 (+)

Expression


Co-expression Network