G202934


Basic Information

Item Value
gene id G202934
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4075919 ~ 4086107 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230316
GAAAACCTTGCCGTCCACATAAAAAGGTCAAAGTATATGATTTTTTTTTATATACTGTATGATTATCACTAATCTGGACACTGTCACAAGGGTCTAGCAGCTGCACTCATCAATAGACTGATGATGTTTTCATACCTGTCTGTTCCTTTCTTTCCTCTGGCCTGCAGGATCTCGCTGAGTTTCTTGATCACCACAGCAGTATTGATCTCCGTGCCTTTGGCGAACATCTTGGGCTTCTCCTTCACAAGCGGCACGCCACCCTTCACCTTCTCCCATCCTCCTTCCTCTGCTTCTCCCTCTTCTTCACCCTCCTCCTCTGTTGGCTTCTTCTTGTGTCTCCTCTTTCTGTCTTCCTTTTTGTCGTCCCTCCTGCGGTCGGACTGCTTGTCGCCGTCTTGAGTTCTTTTTGAGGAAAACCACAGCCAGTGATGCTGCAGTTCCTTCATTGTCTTCACTCTCACTGCCGCTGCCCACTGAATCAGAGCTCCAATGTTCACTCTCATCATCATCACTACTCTCGGACTCTTCATCAGCAGCGCCCTTGAGGAACTTGCTGGCCTCTGGTGCCGCCTTCTCCTCTTCTTGAGGCTTCTTCTTCATAAAGCTCTTGGCAGTGACACCATCATCATCATCACTCTCCGAGGATGACCCACTGCCAATGTCATCCTTCTCCTCCTCTTCTTCAGCTGACTGCTCAGGGTTCTCTTTATAGCTGGCAATCTCGGTTTCAAAGTCCCTGTTGTATTTGCGGATCTTCTGGCGCAGTGTGCTCAAGGCTTTCGCATTGTTTTTGTTCATCTTCTTCTTCCCCTCCTTGTCCTCCCATAGCTGGTTGAGATAGTCCTCCAGATCAGCTAGCAGGCGAATGTAGAACTGCGGCACACCCTCTTTGTCCACGATGGCTTTGCTTTTGATGAACGCTCGACACAACTGCTCAAATTCCTCCAGACATTTGGATATGTCTCGGATCTTCATGGCATTGCGGATCGTCTTGATAAAGTTGGTGAGCTCCTCAAACCTCTTGTCCTTGGCACTGCGTACCACTCTTTTGGTGTCCTCCTCATCATCACTCAGCAACAGGGCCTGCTTATTGAAAGTAGTCCCGGTCGCTTTGGGGGTGATCTCATCGG
>TU230318
TGAAAAGGTAAGTGCGCAGCGACTCCTCCTGGATCTTCCTGACAAGCATTTCCCGCACACACTGGGTTTCTGGGAACAGATCCCACACTTTGCTGTTCATCTTCTCATTGATGATGAAGGAATGGCACGTTCTCCAGTCGCCCATCTTCATGGCCTTGCTGGCGGCCACGACGTGCTCCCTCATGCTCTCAGGAGGACCCAGCAGTGGCTGCCTCTCGCCCACCCTCAGCTGGTGGTGGAACTGTTTGCTGATCATCCTGCGACGGGCATCAAACTCGTGGGCCGCCATATAAGGGATCTCCAGCAGCATGGCTGACACCAGGTACACACACTCCAAGAGCTCCAGATTAATGTGCATGTGGAACGGCACCTGTCGCCTCTTCTCAATCTTCTCCTGCTCAGCATTTCTCTCCTGCATGTTCCTCATGAGGAGTCCCTGTCCCAGCAGCTCCTTGGCTCTGCCGCTGGACTGAATGTCCAGCAGGGCATTGTGGGCGTCTTTAATCATGCCCTGACGGAAAGCACAGATGCCCAGCTGCACCATGGTCCTGTTGTACAAGATCTGGACAGGAGGGTCGGCGTGCTGGATGTTGTCTTGTAGGTGACTCATGAGCATGAGGTCTCTGGCCTGGTACCAGCGGCTGTGCAGGGCATGATGGTAGATGTGGCAGAGGATGGCGCAGGTACGGATACGGTCCGTGCGGTCTTTGGCGTAGATAAACTTACACAAACGGTCCATGATAATAGCACTGTCCTCTCCCTCGCTCTCCTCCTGATCCTGCTCGGACTTTGTCTCTCCCTGTAGGCCCAGGCTGCGACGGTGGGCTTTGTAGTCGAACTTGTAGTACGTGTGCATGATTCTGCGCAGGTAGATGCGACACACTTCCTCTGTGCTGCCTTTAGACTCCAGATACTGCAGCAGGCGGTCAATGATGCCACACACACGGCCCTCGTCCTTCAGGTTATCAACATACTCCTGAGAGTGAGGGTCTGTGTTCTGCATGATTTTGGTGAACTCTTCATCCATCCGCTCCACTAGAGTCAGAATACAGCCACGCACACGGAACGGCTGGTCAGAAACGGCCAGGTTCTCGCTGTCCTCTGCGATGTTTTCTCCGATGAAGATGTTGTTGTTGTTGAACAGGATGTCCAGCAGCTCATCGATGCAGTCCAGACACTTCTTCCACATATCCGCCTTCATGAAGGCAGCCAGGTTGGGGTTGTAGTCGTATAGGGAGGCGATTATGTTGAACTTAATCTTGACGAGGATGCCTTCACCGAGGTTATTCTCATTAGAGATGCCAGCCAGAGAGTGAAGGAGCTCGATCTGAGCAGCTCTGTCTGTTCCTTTCTTTCCTCTGGCCTGCAGGATCTCGCTGAGTTTCTTGATCACCACAGCAGTATTGATCTCCGTGCCTTTGGCGAACATCTTGGGCTTCTCCTTCACAAGCGGCACGCCACCCTTCACCTTCTCCCATCCTCCTTCCTCTGCTTCTCCCTCTTCTTCACCCTCCTCCTCTGTTGGCTTCTTCTTGTGTCTCCTCTTTCTGTCTTCCTTTTTGTCGTCCCTCCTGCGGTCGGACTGCTTGTCGCCGTCTTGAGTTTTTTTGAGGAAAACCACAGCCAGTGATGCTGCAGTTCCTTCATTGTCTTCACTCTCACTGCCGCTGCCCACTGAATCAGAGCTCCAATGTTCACTCTCATCATCATCACTACTCTCGGACTCTTCATCAGCAGCGCCCTTGAGGAACTTGCTGGCCTCTGGTGCCGCCTTCTCCTCTTCTTGAGGCTTCTTCTTCATAAAGCTCTTGGCAGTGACACCATCATCATCATCACTCTCCGAGGATGACCCACTGCCAATGTCATCCTTCTCCTCCTCTTCTTCAGCTGACTGCTCAGGGTTCTCTTTATAGCTGGCAATCTCGGTTTCAAAGTCCCTGTTGTATTTGCGGATCTTCTGGCGCAGTGTGCTCAAGGCTTTCGCATTGTTTTTGTTCATCTTCTTCTTCCCCTCCTTGTCCTCCCATAGCTGGTTGAGATAGTCCTCCAGATCAGCTAGCAGGCGAATGTAGAACTGCGGCACACCCTCTTTGTCCACGATGGCTTTGCTTTTGATGAACGCTCGACACAACTGCTCAAATTCCTCCAGACATTTGGATATGTCTCGGATCTTCATGGCATTGCGGATCGTCTTGATAAAGTTGGTGAGCTCCTCAAACCTCTTGTCCTTGGCACTGCGTACCACTCTTTTGGTGTCCTCCTCATCATCACTCAGCAACAGGGCCTGCTTATTGAAAGTAGTCCCGGTCGCTTTGGGGGTGATCTCATCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU230316 False 1130 lncRNA 0.49 8 4075919 4080229
TU230318 True 2331 lncRNA 0.53 17 4075919 4086107

Neighbor

gene id symbol gene type direction distance location
CI01000047_04022011_04032483 NA coding downstream 43253 4020885 ~ 4032666 (-)
CI01000047_03947036_03979744 NA coding downstream 95594 3946306 ~ 3980325 (-)
CI01000047_03873674_03934985 NA coding downstream 140790 3873459 ~ 3935129 (-)
CI01000047_03855710_03868781 NA coding downstream 206115 3855543 ~ 3869804 (-)
CI01000047_03785018_03800982 NA coding downstream 274915 3784742 ~ 3801004 (-)
CI01000047_04105620_04111019 NA coding upstream 19316 4105423 ~ 4111184 (-)
CI01000047_04128025_04134725 NIF3L1 coding upstream 41795 4127902 ~ 4134725 (-)
CI01000047_04137872_04142531 CABP5B, CABP5, CABP5A coding upstream 51492 4137599 ~ 4142531 (-)
CI01000047_04213574_04213976 NA coding upstream 127314 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A coding upstream 199120 4285227 ~ 4286694 (-)
G203067 NA non-coding downstream 215 4004633 ~ 4075704 (-)
G202959 NA non-coding downstream 23481 4044710 ~ 4052438 (-)
G203059 NA non-coding downstream 120645 3949616 ~ 3955274 (-)
G203082 NA non-coding upstream 5602 4091709 ~ 4091935 (-)
G203084 NA non-coding upstream 7071 4093178 ~ 4093411 (-)
G203085 NA non-coding upstream 7312 4093419 ~ 4093621 (-)
G202997 NA non-coding upstream 8248 4094355 ~ 4094892 (-)
G202991 NA non-coding upstream 44605 4130712 ~ 4176770 (-)
G202944 NA other downstream 89517 3985342 ~ 3986402 (-)
G202733 NA other downstream 942267 3132313 ~ 3133652 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 2360402 1706068 ~ 1744282 (-)
G200472 NA other downstream 3241448 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 3553677 519108 ~ 522245 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 488228 4574335 ~ 4576342 (-)
G203286 NA other upstream 788272 4874379 ~ 4876734 (-)
G203840 NA other upstream 1832401 5918508 ~ 5927344 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005097 eif3c coding NC_007123.7 CM002896.2 3944229 ~ 3962372 (-)