G201555


Basic Information

Item Value
gene id G201555
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4286779 ~ 4349774 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU228728
CGTCACTTTCCCGCCGGAACGCGCTCCCTCAGCTGGACTGAGTGGCAAAAGAACCTGCTGCATGACTGGATTTAATAGAGGAAACTGCGAAAACGCGAGTAAAACAAACGATTACACTAAAGGTTGCGATCGAAAGTGTTCTTTATGAAACCTAATCCATGGATATTGGCATGCAGCCAGAAATCGTGTTTCTTGACATTTATATGTGCCTGATTTCGACGCCGGGGAAATACATAAAGCAAATCTGCCGGTGAACGCTTTATATATCTACAATATAGGTAGGTCTAAATCGGAGTGATCACTTATATCAACGTTATATATTTCGACATATCGAAATATATATAATATAAACTTGTATTGTTTTTGTCAGTGTTTATTTAAAAACACCCAATTGAATATAAGATGGTAAATACTTAATTGATGAGTTGTCAACACAATATATAACAATACAATATATAGGGTATGATTTTACCCCAAAATCCAACATTTTGACACAAAATGATAACTGCAAAACATGTTTCTTTGCCTGGAGTCCAGCTGTTTCTGTGAATTGCAGCGACCTGTTTGCTTCTTTTTTTCTGTAGCTTTCAGCAGTCTGTAAAAATATACCTTAGATTTTGGGTCAAAGCTATTTGTACAGTCACTCGCAAAGCTCTTTCCCGTTTTGGATGTGTTTTGTGTGTTTTTCGCGGCATTCACGCTGAAAACCAATGCTGCCACTCAGTCTTTTGCCACTCAGTGGGCGTAACCGCAGTCATAACGGTCGACGGTGACGTCACGTGCATACCCTCTATACAATTGGCTACCTCTTTCCGTAACAGTTTATAAATTATATTATAGTTTAGGCTATAATAATATTTTTCATGTTCTCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACATTAATAAACCTTTCTAAATAACAAACAGGCATTATTAGGGGTTTTCAAACTGGGGTCCGCAAGGGAGTGCTGGGGGCTCCGTGTAAAAGTTTAGAGAAAAAGTGTAAAAAAAATGTAATATAATCAAATTGATAAAATTAAATAAGAAAATGCATTAAAGTAAAATGTATATAGTATACACTTTTATAGTATATATGGGCTCCACTTTTAAGTAGACTTTTATTAATTACTGAAACATCAGTATCCTGACAAACCCCAGGAAGTGTGAGGATAACTATTTGAGATGAGAAGAGAAGGCAGTGCAAGTCAGCTAGCCAGATAACATGCAATGTGTTGAGGAAGAAACTGAAATATTGCTCAAACAGATCAATCTCATCAGATAACTTGTGAAACTAATGGTTGTACCACAGTAAAGAAATCCAAAATTCCTTTCTTTGCATTTTCCAATTTTATTTATTATTAATTTTTTTTTTTTTGGCAATTATCATATATAAAGATACATTAACTTACAAAAACTTACAAAAAGTTTTTTCAAAAAAGAAATAATGTCCATTAGATGAAGTATACCACCATAACAACAAAGTGTATTACATATTTTCATTGTACATATCTTTAAAACTTATATTTATTTTTTTCAAATAATAAAAGGATACAGACTAAAGAGAAAGATAAAGATAATTTTGTGCTACAATGCAACAAATCAGCCCACCCAGATGTCAAACAACTCTTTCTTAAAAATAGCAAAAACTTAAAACCCTTTTTAAAAAAAAGTTTAAAATGCACTTAATAAACTGAAATGACATTTATATGTGATATATTTGGAAAAACCTCAACAGAATACAAAACTGACTGTGACAAATTATATTGCTACATCAGTATCCAGTAAAACAAATATATATCTTTGTGATTTGTGAAACACACCATGCATCCGCATATAACATGCATATATATTTATAGCAGTAAAAGATAACAAATTGTCATAACCCCAGTATATAGAAGTTGATGAGATACATGATAAAAGAAATTAATTATTATTTACAAGTACTTAAAAGTCAGGGAATAATTAACATTGTGTAAGATTAATCAAGAAAAAAACAAAATATTGTAAAATCAAGACAATAACTGCTTTCAATTGTAATATATTTTAAAATGTAAATTTTTTTTTTTTTTTTTTAAACAATGAATATGGTGTTAAGTGAACTGAGAATAACTTTCATCTTCTCATCTCTATACTAGTCTTTCCGTGTTGTTTTGATACATTTAAAAAAAAAAAAAGGATGATAGATATTCTTTAATCTTTCTGACAAACTACAAAAGATAATGTGAATTACAGTATGTACGATGTTTTCTACATTTTTTAATTGTAGTGTACAGTATTTATTATAAGGGGGTAGAATCCACAGCTCAGTACTTACTACTCATGAGTACTTTTGAAATAAGCTACCTTTTTACTCTTACTCAAGTAGTTTTTTGGACAAATACTTTTTACTCTACTCACACTACATTTTTTTGAATGTAACGGTACTTTTATTTGAGTAAATGTTTTCAGTAATCTTTCTACCACTGGAAAAGAACCTTTTAAAAGCACTGCATGCTTTCTTGCCGAAAAAATGATAAAAAACAAAAATAAAAAAAATTGCTATAAAAAATAGAGAAAATGATATCAAAGAGATTTGTAGAAGAGATGTTGCAGAAGATGGAATATTTGTTTCTTTATCTATTGTTGTGGAAGAAGGGAGAGGATCAGGACAGGTGTAATTGTTGTCAGAATCTGTTCCAGTGGAGGTAAACTGCACAAAACCTGGAGGATCGCTGCACATGAAGGAGGTGATCCATTCCTGATAGCGGGATACTCTGGTGTAAACACCGGGATATTCAGGTCGAGCACAGCCAAACCCAAAGCTAACGATACCGGACTGGACCCATACAGAGCTCTGCCTGCTCACCATCGGACCTCCTGAATCTCCCTGAAAATACAAATCAATGCAGTCATTGTAGAAAGAGACATACACTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228728 True 2924 lncRNA 0.32 2 4286779 4349774

Neighbor

gene id symbol gene type direction distance location
CI01000047_04222867_04253291 NA coding upstream 33068 4222682 ~ 4253711 (+)
CI01000047_04214987_04217836 VPS25 coding upstream 68302 4214987 ~ 4218477 (+)
CI01000047_04198702_04207295 FAM57B, FAM57BB coding upstream 79374 4198702 ~ 4207405 (+)
CI01000047_04183386_04192887 MAZ coding upstream 93753 4183386 ~ 4193026 (+)
CI01000047_04153298_04179343 TAOK2A, TAOK2, TAOK2B coding upstream 105913 4153298 ~ 4182449 (+)
CI01000047_04471595_04476690 SGCA coding downstream 121351 4471125 ~ 4477217 (+)
CI01000047_04582184_04586359 TMEM101 coding downstream 232230 4582004 ~ 4586796 (+)
CI01000047_04606043_04610846 G6PC3 coding downstream 256269 4606043 ~ 4611322 (+)
CI01000047_04663268_04663847 NA coding downstream 312541 4662315 ~ 4663996 (+)
CI01000047_04678392_04690824 NA coding downstream 328218 4677992 ~ 4691097 (+)
G201526 NA non-coding upstream 221957 4063009 ~ 4064822 (+)
G201520 NA non-coding upstream 289423 3996459 ~ 3997356 (+)
G201509 NA non-coding upstream 354881 3907608 ~ 3931898 (+)
G201508 NA non-coding upstream 355097 3907414 ~ 3931682 (+)
G201609 NA non-coding downstream 58744 4408518 ~ 4408772 (+)
G201613 NA non-coding downstream 70410 4420184 ~ 4425415 (+)
G201599 NA non-coding downstream 128577 4415813 ~ 4482457 (+)
G201639 NA non-coding downstream 190525 4540299 ~ 4540501 (+)
G201641 NA non-coding downstream 196119 4545893 ~ 4546137 (+)
G201387 NA other upstream 584919 3696516 ~ 3701860 (+)
G201186 NA other upstream 1198592 3018705 ~ 3088187 (+)
G200076 NA other upstream 1708782 2520596 ~ 2577997 (+)
G200003 NA other upstream 1967817 2316863 ~ 2318962 (+)
CI01000047_01749606_01752688 NA other upstream 2533942 1749606 ~ 1752688 (+)
G202382 NA other downstream 2465943 6815717 ~ 6816118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G121450 NA non-coding NC_056715.1 CM032084.1 15713410 ~ 15720323 (-)