XLOC_009481 (si:ch211-187g4.1)


Basic Information

Item Value
gene id XLOC_009481
gene name si:ch211-187g4.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41471175 ~ 41486793 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018630
ACACTCGGTACTCGTACAGCTAAATCGTTGTTTCTTTGTCTTTTCAGTCCAATCAGTGGCGCAGATCAGATCCTGTTTCATAATGGACGACACACAAATATCCAGACATGAAAATGTTTCTCCAGGATGCAGttcagttcatcagaagagcTTAGAtccagagcccagctgtgtgtctataaGGAGTGACCAGTCTATGGGTCATCCATATGATTTTAAGAGTGAAGATACACCGATTGATCTCagTTTAGTCCATCAGAAGAGATCAAAtccagagcccagctgtgtgtctatgaggaGTGATGGCTCTATGAATCCTCCATTGTACTTTAAGAATGAAGAGACACCGCCTGATCTcagttcagttcatcagaaaAGCACCGAATCAGAGTCCGGCTGTGTCTCCATGAGGAGTGATGATGAATCTGTGGATCAGCCGTTAGATGTTAAGAGTGGAGACACAGAGACTGATCTCAGccATAAAGCCCTCAACACATTTAGATCAAATCTGCTGAAGAAGTTTGAGTGTCTGTATGAGGGAACAGCGGCACAGGAAAACCCAGCATTTCTGAATGAGATCTACACAGAGCTCTACATCACAGAGAGTGAGAGTGGAGAGATCAGTCATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGATCAACAACAGAGGACACAGCGATCAAATGCAGAGACATCTTTACACCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATCGGAAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGATCAATCTGATGAAGGACAAAACACTCAGTCTGTCAGATCTTCTTCAGCTCTATTTCCCTCAAACTAAAGAAATGGAAATATCCAGTGACAAATATAAAGTgctgttcatctttgatggtctggacgAGTGTCGTCTTCCTTTAAATTTCAAAAGGAACAAGACTCTGAGGGATGTGTCCAAAACATCATCAGTGGATGTGCTGCTGACAAACCTGATTGTGGGgaatctgcttccctctgctctcatctggatcacctccagaccagcagcagcagatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATgaccctcagaaggaggaatacttCAGCAAGAGAATCAGTGATCAGAGGCTGGCCAATACAATCATCTCACACCTGAAGTCCTCCAGGAGCCTctacatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTTCTGGAGAAGATGTTGAGTGAAACAGAGACTGCAGAGATTCCCAAGACTCTCactcagatgtacacacacttcctGATCCTGCAGACCAACATCAAACATCAGAAGGACTATGAGGAGAAGCTGACAGATAAAGATATGATCCTCAAACTGGGGAAAGTGGCTTTTCAGCAGCTCATGAAAGGCAATATAATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGGCAGAAGCTTCAGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGGGAAAGTCTTCAGCTTTGTTCATCTGAGCATTCAGGAACATCTAGCGGCTCTATATGTGCACCTCtcctgtataaaaaaaaacagaaatgagtTTAACCCTGCCGCCAAACAGAGTGTGTTggccaaaacaaaattaaaattaaaaataaaaccagcTTCATTATCTGAACTGCATCAGCGAGCTGTAAATGAGGCTCTACAGAGCAAAAATGGACATCTGGATCTTTTCCTGCGGTTTCTTCTTGGTCTGTCAGTGGAGTCTCATCAGATTCTCCTTCAAGCACTAATGAAACTGAGAAGCAGGTCAATCAAGAATAATAAAACAGTCGAGTACATCAAGATGAAGATCAGGACCATCAACTCTATAGAGAAATCCATCAATCTGTttcactgtctgaatgaactgggTGATCATTCACTAGTGAAGGAAATACAGCAGTACCTGAAATATGGAGGAATAAAGGGAGCCAAACTCTCCTCATCTCAGTGGTCAGCTGTAGTTTTTGTGTTGTTGACATCAGAGAAGAAGCTGGAGGAGTTTGATATTATTGAATTTGTTGCTGGAAACGATAAAACTGAAAAACTGCTCGTTTTTAGGAGGCTGCTGCCTGTGGTTAGAGAATTCAGATCAGTTCAGTTGTATGATTGTGGTCTCACAGAtgaaggttgtgctgctttggcttcagctctgagatcaaaccctgaACACCTGAGAGAACTGGATCTGTCCTGGAATAATCtaggagattcagtgactcttctctctgctgtactggaggatcctcactgtaaactggagaaactGTGGTTGTATAATTGTGGTTTTACAGAtgaaggttgtgctgctttgacttcagctctgagatcaaaccctgaACACCTGAGAGATCTGAATCTGTCAGATAATAATCtaggagattcagtgactcttctCTCTGCTGTACTGGAGAATCCTCGCTGTAAACTGGAGAAACTGTGGTTGAGAGATTGTGGTCTCACAGAtgaaggttgtgctgctttggctttagctctgagatcaaaccctgaACACATGAAAGTCCTGGATCTGTCCTGGAATAATTtaggagattcagtgactcttctCTCTGCTGTACTGGAGGATCCTCGCTGTAAACTAGAGAAACTGTGGTTGTTTAATTGTGGTCTCACAGATAAAGGTTGTTCTgctttggcttcagctctgagatcaaaccctgaACACCTGACATTCTTGAGTCTGTCTGAGAATAAACTATCAAAATCAACAGAGAAGCTGCTCTCTGATCTGAAAGATGACCCACGTTATAAACTGGAAACATTATACAATCGTGAGTATGTTTTAAGCT

Function

symbol description
si:ch211-187g4.1 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-161 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000094350

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018630 True 2984 mRNA 0.44 9 41471175 41486793

Neighbor

gene id symbol gene type direction distance location
XLOC_009480 nlrc8 coding downstream 32354 41422248 ~ 41438821 (-)
XLOC_009479 CR854897.1 coding downstream 63027 41400520 ~ 41408148 (-)
XLOC_009478 CR854897.2 coding downstream 75102 41393401 ~ 41396073 (-)
XLOC_009477 si:dkey-121n8.7 coding downstream 80765 41349268 ~ 41390410 (-)
XLOC_009475 usp16 coding downstream 159880 41249772 ~ 41311295 (-)
XLOC_009482 CR925731.1 coding upstream 42467 41529260 ~ 41543440 (-)
XLOC_009483 NA coding upstream 153648 41640441 ~ 41667355 (-)
XLOC_009484 spsb4b coding upstream 183949 41670742 ~ 41689981 (-)
XLOC_009485 si:ch211-276c2.4 coding upstream 206842 41693635 ~ 41708657 (-)
XLOC_009486 ftr90 coding upstream 224934 41711727 ~ 41744848 (-)
XLOC_009474 NA non-coding downstream 225166 41238245 ~ 41246009 (-)
XLOC_009472 NA non-coding downstream 398978 41068774 ~ 41072197 (-)
XLOC_009471 BX571794.3 non-coding downstream 1110422 40356379 ~ 40360753 (-)
XLOC_009468 CR388129.1 non-coding downstream 1341634 40125409 ~ 40129541 (-)
XLOC_009494 NA non-coding upstream 567046 42053839 ~ 42058846 (-)
XLOC_009495 CR925728.2 non-coding upstream 577390 42064183 ~ 42066345 (-)
XLOC_009496 CR925728.1 non-coding upstream 593601 42080394 ~ 42086212 (-)

Expression


Co-expression Network