G203429


Basic Information

Item Value
gene id G203429
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5121926 ~ 5164869 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230876
GGCCCACGATCTGTGACGTGTATTTGGGAAGCTGCTGGACTTTGCCGTGAAGGATGAGGGAAACCAGGATGTACTTCTTGTACGCTTCTAACATGATGTGACTGACAGCCATTGCTGGAGTGGTTATTGCCTGAGGATAAGACAGAAAGACTCTCTGAAAGGGGACATATCATAAAAAACAAACTTTTTCTGTGTTTAAGTGCTATAATCGGGTCCTCGGTGCACCTACCAACCCAGAAAATGTGAAAAAGGACAACCCAGTAACTTTGTTTTGGTAAGCCTTTCTTTGCAAGCATGCACAAAAACGAGCCGCCAAGATTTTGCTCCCCTTGTGATGTAGGAAGGGGATCTTATTATAATGCTACCGCCCCTTAATCTGCACGTTTCCACCCACGCTGCCGCTATTTTGTTTTCACAAGCGAGGCAAAGCTGCAGATGAAGAAAATGAAAGTATTTTAAAGTAATGCAGTGTGTGTTTCTTAGGTTCAGGCAGCTCCACTTTCCGTGTGCTTTCCCTTAGCCTCCATACGCTCTATTACTTTATGCTAGCACAAGTTGTGTTTGACAGAAATGTACTGGTGTTACATATGACTCACCCACAAAACATCTAATGTGATGTCATTTTACGCCAGACTGCTTCATAAACGAGGGTCAATTCAACGCTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTCGATGAGTTGAATCAAGTCTCTCCATCAGTGTCCGACTCCGGTTTGAACAATGTAAGGCTGAACAACGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU230876 True 821 lncRNA 0.44 2 5121926 5164869

Neighbor

gene id symbol gene type direction distance location
CI01000047_05108733_05109209 MED9 coding downstream 12670 5108004 ~ 5109256 (-)
CI01000047_04840115_04844233 SOX8, SOX8A coding downstream 277693 4839563 ~ 4844233 (-)
CI01000047_04790377_04795864 CNTD1 coding downstream 325610 4790224 ~ 4796316 (-)
CI01000047_04703391_04706693 NA coding downstream 415233 4703038 ~ 4706693 (-)
CI01000047_04613815_04652751 TANC2 coding downstream 469175 4613815 ~ 4652751 (-)
CI01000047_05219313_05222967 NA coding upstream 54321 5219190 ~ 5222990 (-)
CI01000047_05235089_05236228 SSTR2A coding upstream 69275 5234144 ~ 5236273 (-)
CI01000047_05247473_05248489 SSTR5 coding upstream 82094 5246963 ~ 5248681 (-)
CI01000047_05546059_05547988 SOX9A coding upstream 379912 5544781 ~ 5548356 (-)
CI01000047_05805272_05807974 NA coding upstream 640403 5805272 ~ 5807974 (-)
G203446 NA non-coding downstream 8732 5112366 ~ 5113194 (-)
G203442 NA non-coding downstream 22214 5099498 ~ 5099712 (-)
G203437 NA non-coding downstream 25245 5096086 ~ 5096681 (-)
G203359 NA non-coding downstream 116949 5004472 ~ 5004977 (-)
G203356 NA non-coding downstream 130936 4990760 ~ 4990990 (-)
G203516 NA non-coding upstream 130601 5295470 ~ 5317664 (-)
G203417 NA non-coding upstream 222223 5387092 ~ 5388043 (-)
G203574 NA non-coding upstream 225853 5390722 ~ 5391012 (-)
G203576 NA non-coding upstream 228229 5393098 ~ 5393337 (-)
G203709 NA non-coding upstream 473574 5638443 ~ 5638653 (-)
G203286 NA other downstream 245192 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 544961 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 835245 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 907496 4213409 ~ 4214085 (-)
G202944 NA other downstream 1135524 3985342 ~ 3986402 (-)
G203840 NA other upstream 753639 5918508 ~ 5927344 (-)
G203881 NA other upstream 878384 6043253 ~ 6043789 (-)

Expression


Co-expression Network