G203516


Basic Information

Item Value
gene id G203516
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5295470 ~ 5317664 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230992
TTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGTTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACTCCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGCGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACGGCGTGTTTTTGCTCACACCCAAATAGGGGCAAAATTGACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTTACAGACACATTCTGGGGACACCAGAGACTTATATTACATCTTGTAAAAGGGGCATAATAGGTCCATTTTAAAGTTCTCTAATATCACGTACAGACAGTGTGACAGATCACATGACTTCAGCTGCACTCTGCTGGTCATAAACTTCAG
>TU230993
CATGCTAGTCGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACTCCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGCGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACGGCGTGTTTTTGCTCACACCCAAATAGGGGCAAAATTGACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTTACAGACACATTCTGGGGACACCAGAGACTTATATTACATCTTGTAAAAGGGGCATAATAGGTCCATTTTAAAGTTCTCTAATATCACGTACAGACAGTGTGACAGATCACATGACTTCAGCTGCACTCTGCTGGTCATAAACTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230992 False 529 lncRNA 0.44 3 5295470 5317664
TU230993 True 528 lncRNA 0.44 2 5295470 5314304

Neighbor

gene id symbol gene type direction distance location
CI01000047_05247473_05248489 SSTR5 coding downstream 46789 5246963 ~ 5248681 (-)
CI01000047_05235089_05236228 SSTR2A coding downstream 59197 5234144 ~ 5236273 (-)
CI01000047_05219313_05222967 NA coding downstream 72480 5219190 ~ 5222990 (-)
CI01000047_05151314_05157285 NT5M coding downstream 137076 5149719 ~ 5158394 (-)
CI01000047_05108733_05109209 MED9 coding downstream 186214 5108004 ~ 5109256 (-)
CI01000047_05546059_05547988 SOX9A coding upstream 227117 5544781 ~ 5548356 (-)
CI01000047_05805272_05807974 NA coding upstream 487608 5805272 ~ 5807974 (-)
CI01000047_05862382_05868129 NA coding upstream 544161 5861825 ~ 5868679 (-)
CI01000047_05869347_05869519 NA coding upstream 551620 5869284 ~ 5869519 (-)
CI01000047_05958264_05971163 MAPK8B, MAPK8, MAPK8A coding upstream 640227 5957891 ~ 5971163 (-)
G203429 NA non-coding downstream 130601 5121926 ~ 5164869 (-)
G203446 NA non-coding downstream 182276 5112366 ~ 5113194 (-)
G203442 NA non-coding downstream 195758 5099498 ~ 5099712 (-)
G203437 NA non-coding downstream 198789 5096086 ~ 5096681 (-)
G203359 NA non-coding downstream 290493 5004472 ~ 5004977 (-)
G203417 NA non-coding upstream 69428 5387092 ~ 5388043 (-)
G203574 NA non-coding upstream 73058 5390722 ~ 5391012 (-)
G203576 NA non-coding upstream 75434 5393098 ~ 5393337 (-)
G203709 NA non-coding upstream 320779 5638443 ~ 5638653 (-)
G203712 NA non-coding upstream 325081 5642745 ~ 5642967 (-)
G203286 NA other downstream 418736 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 718505 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 1008789 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 1081040 4213409 ~ 4214085 (-)
G202944 NA other downstream 1309068 3985342 ~ 3986402 (-)
G203840 NA other upstream 600844 5918508 ~ 5927344 (-)
G203881 NA other upstream 725589 6043253 ~ 6043789 (-)

Expression


Co-expression Network