G203417


Basic Information

Item Value
gene id G203417
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5387092 ~ 5388043 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU230862
GAAAACTTTGAATTAAACATTTAGTTTGAAAGTGACTGGCTGACTGGAAAGACTAGCTTAAAACATTGGATTACTCAAGACGGTAATGAACAGAGTCATCATCGCTTTTCATTCAAATGAGACACGACTATACTGAGAGCTTTCATGTGCACAGAAATACACACACACCTAAACAACCCCTTATGTAAATCATTCAAGTTTTAATAATTATTCAAGTATTTTGCAATCAATCCTTTTTTGCCGTCTAAACGAATGTGGTCCGCGAGTCATTCATAAAACAAATAAAAATTACATAAAATACGTAGAAAAATATTCCATCGGATAATAAACCTACAGTATACACCAAAAAAAGGCTGCTTTGGTCGCTTCTTTCAGTGCAGTCAGGTGACATTCAAAGATTCGACCAATGAAAAGCCTCAGCCAAGACCCACATCCAATGACATCATCACGACGAAGCCAAGAATGGATGTCCACGAGGCCAGCTTACCATTCCCACTGTAAGAGAAACACACACACATTCAGTGGCATACGAACATCTGCAAACTTTTCCTTTCAGTAATGACTTTTACTGTGTTCTCACCTGACTTGAGCTTCAGGAATGATGTCATCGACCACCACATACACCATGGCTCCTGCGGCGAAGGCGAGAGCGTACGGTAGCAACGGCTCCGCCAGCACCACGGCAACGGCCCCTAACAACCCAGCCAGAGGCTCGACCATCCCGCTCAGCTGTCCGTACCTGTGAGACAGAGGCCGCACCGTCACACAGCTCGTGTAGTGCTCCGAATCGCTCAATTAACAGCTTTTAGAATGTCTCAGAAATCAATAAGAGCGCTGAGGACATATTAGGAGTAAATTAAGACAAATAGACGTTAATAAATGTTTGTGACTCTGGCATTGTCCCAAAACCAAGAGAGCTGCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU230862 True 923 lncRNA 0.43 2 5387092 5388043

Neighbor

gene id symbol gene type direction distance location
CI01000047_05247473_05248489 SSTR5 coding downstream 138411 5246963 ~ 5248681 (-)
CI01000047_05235089_05236228 SSTR2A coding downstream 150819 5234144 ~ 5236273 (-)
CI01000047_05219313_05222967 NA coding downstream 164102 5219190 ~ 5222990 (-)
CI01000047_05151314_05157285 NT5M coding downstream 228698 5149719 ~ 5158394 (-)
CI01000047_05108733_05109209 MED9 coding downstream 277836 5108004 ~ 5109256 (-)
CI01000047_05546059_05547988 SOX9A coding upstream 156738 5544781 ~ 5548356 (-)
CI01000047_05805272_05807974 NA coding upstream 417229 5805272 ~ 5807974 (-)
CI01000047_05862382_05868129 NA coding upstream 473782 5861825 ~ 5868679 (-)
CI01000047_05869347_05869519 NA coding upstream 481241 5869284 ~ 5869519 (-)
CI01000047_05958264_05971163 MAPK8B, MAPK8, MAPK8A coding upstream 569848 5957891 ~ 5971163 (-)
G203516 NA non-coding downstream 69428 5295470 ~ 5317664 (-)
G203429 NA non-coding downstream 222223 5121926 ~ 5164869 (-)
G203446 NA non-coding downstream 273898 5112366 ~ 5113194 (-)
G203442 NA non-coding downstream 287380 5099498 ~ 5099712 (-)
G203437 NA non-coding downstream 290411 5096086 ~ 5096681 (-)
G203574 NA non-coding upstream 2679 5390722 ~ 5391012 (-)
G203576 NA non-coding upstream 5055 5393098 ~ 5393337 (-)
G203709 NA non-coding upstream 250400 5638443 ~ 5638653 (-)
G203712 NA non-coding upstream 254702 5642745 ~ 5642967 (-)
G203713 NA non-coding upstream 256292 5644335 ~ 5644537 (-)
G203286 NA other downstream 510358 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 810127 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 1100411 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 1172662 4213409 ~ 4214085 (-)
G202944 NA other downstream 1400690 3985342 ~ 3986402 (-)
G203840 NA other upstream 530465 5918508 ~ 5927344 (-)
G203881 NA other upstream 655210 6043253 ~ 6043789 (-)

Expression


Co-expression Network