XLOC_009485 (si:ch211-276c2.4)


Basic Information

Item Value
gene id XLOC_009485
gene name si:ch211-276c2.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41693635 ~ 41708657 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018638
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcagggacTGTTGAATTGTGCAAGTGAGTTGATTGGCTGCATTACAAACTTCAAACCACTACATCCTGCATGTCTTTTGTGTACACATACAGACAGTATATAACATCCAGTCGGTGAACTCTACAACACAACTGCAGTAAACATACATTGTCTTGAAATTTTGGTATTTCACTTTGATATATATCTTTAATAATGTGAATAGGCCAAATGTCAGCCCTTTTttctttatatgtttatatattcattttgtttagtaataaagcaatgtttctttttttaaatgtgtaaatgcacACATAAACCTGATGTATGTTAGCAATATTATAGAATACTGTAAGTTAATCTTTGTATAAATATTACACAGCGTTTCATTACATTTAAACCATTTTTTCCTTAATCACTTTGACGTGattattgaattatatatttttatagttgttTACACCTCATTTGAATATCATAGTTACTATAAAACTGGCAAATGAGCCAGTTAAAAACTGGCAAAACACATTTTGAagcaaataaatatgaatttatttatggACGTCAATAACCATTACCGGTTGTCAGAGATGAATTGATAACATGAATATAGCAAAGTGAgatagaaaaataaatcaatagaaagtaaaatacaaatgtgtttatttgatattttttacaaatattttacttcaTCATAGCCTACGCTCCTAACCAAAAGGTGGCGTTAATGCGCCTAGAAGATGAATACAACCGCTAATAACGCTTTCAATAGTGAAGAAGAGGAAGACGCGCGTGCGCGGATTAGTGTAGCGCTAGAGAAGAAGCAAGCGCTGAAGTAATAAAAACGCATATTTGTGTCCCGTTTTTTATTGATTATAGTAAAACATACCGGCAGAGAGATCTTCACAGCCTATGAAACTGATGTCCCTCTGCTAACAGTTCATCAATAAAGGTTGGGAGTATCCTGCGAAAGAGACAAAGTCTGCGAGTAAACGCTTTGTGtgagagagactgctgaagatggAGTTTTTTGAAGTGGAGATCGACCTGAGTGAGCTAGAACAATCCACAGTGAGTGATGAAGAAGATATCGAGGAACAAGCAGATCAAGAATTAAATGAAGATGAAGACGATGAAGAggatgaggatgaagatgaagatgatgatgatgatgatgatgatgatgatgatgaagatgaagatgaagatgaataTTATAAATCAAAGAAAACTCCAAAAACATCCAAAACGCTGCACACCTGCTCACAGTGTGGAAAGAATTATAAGCATATATCCTCTCTCAGAATTCACCTGCTCagtcacactggagaaaagcctttCCACTGTGATCAGTGTGAGAAGACATACAGCACCCTTTCAGGCCTGAAAATTCACCAGGTTGTTCACTTCAGCGAGAGGCCTTACTCCTGCTCGGTCTGCGGACGGAGCTTCTCCCGCTTGGACAGCTGCAAACAACATCAGAAAACGCACGATAAAGTGCGAGATCACGTGTGCACCGAGTGCGGGAAGAGCTTTACCACGTTCAGCCAGCTCAAACAGCATCAGATCATTCATTCTGGATTAAAACCGTTCAAGTGCTCCTACTGTGACCGGAGTTTCACCCAGGCCGGAAACAGGAAGTCTCACGAGcggattcacaccggagaaaaGCCGCATCGGTGTACTGAGTGCGGAAGGAGTTATAAAGATCTGACGGGTCTTAAAAATCACATGCGCGTTCACTCCGGGGAAAAGCAGTATGTGTGTGAACACTGCGGGAAAGGGTTTAATTCGGTGTCAAATATGCGGTACCACCTGAGAGTCCATACCAATGAGAAACCGCACGTGTGCTCCGTCTGTGGCAGGGGGTTTTCGCTGCTGGTCAGTTGTACGTTGCACGAAAAAATACACACAGGTGAGAAGGATAAAGTGTGCGATGATTGCGGGAAAAGCTTCGTCACTAATGGTCAGTTGAAACGACACAGAGTCGTTCATTCTGGAAAGAGACCGTACCAGTGCTCGTATTGCGAGAAGAGTTTTTCGGTGTCGGCGCATCTGAAAATACACATGCGACTTCACACTGGCGAGATGCCGTACCGCTGTGCTGACTGCGGAGAGAGTTTTCGACATTCAAACTCGTTAGCCATTCATAGGAGAAAACACGATCAGCCGGAGCAAAGTCCTCCTGTTCATACAGTTAGCTAACTTTCAAGTGTaattaggggtgtaacaataCTTTGTGATATGGAGAAATCGCAAAATAAAATTTGTGAAtgatagtgatgggaagtttgtataagggctgcacaatatatcgtaaAATTATAGTTAAAtcgataatagtatatgcaacatgcagtacagttgaagtcagaattattcgtgTAGCTGCCCTTTGGCTTCCATGAATGAGACAGAGAGTTTCTGACGGGTGCTTGATTCTTTATTATGCTCAAGACGAGAGCTATTTAACTTTCGTTGCGTATCACcgtgaaactacacaaagaaacaacaaaaatctattaaaaaaactacaaaaaaaaatatgacaaataaagatACAATGTACAGAGCGATATATGAAAATGAAACAATGAAGTATATGAAGACAGTTtgaaacaactaaaaaaaaaggCAGAGCTCACGATtaacataaacatacaaacaaactcaTGTGGCTTAAACAATTAACTTCACATGCCTCGCTCCGCTTTACCAAAGGGTTCTATATTATAAATTGAGCAGGATTAAGCCTCCTTTCTCCATAAATCGCTACTTCTCTCCATGAACTGCACAGAAACGGGTATCCTCTTCGCTCTGCTAGCCTGATTAACCTATTTGTTACCTGGACTACCGAAACATGTGATATGCTCTGAACATATTTAAAGTGATATAATCATTTTGTGGTCACTTACAattcgtcctcctgtgaattattattattattcattcattcattcatttcttttccggggttgccacatcggaatggaaacttatccagcatgtgtttaacgcagcggatgcccttccagctgcaacccatcactgagaaaaacAGTAATAATCCTAATATTGAACTTTTTTTAGTTTAGCATGCAGTATCGAGATGATATCGTATCATGAGTTTAGTATTGCAATATGTATCAAATCCTGACGTAAGTGTATTGTTACACCCCTGTTGTCTATTCATAGTTAGTGCAGTGTTACAATAACTAAGGAGTAATTGATGACATGCCATTGATTAATTAGAAAAAGGGCGTCCTGCTGATTTGGTTCAGAAGGccacttttttgtcagatggctcactggtcaggtatacatccgcgctgaAGTAtaaaggtgaaagtcatcatagcttgcatagaatagacccagctcccaacccaactttgagaatagattaacggtgatattttttttatcgtGCGATAAGAGTCTTGCGTTAACGCAGCACAGTAACGCCGATAacagcccaccactaatatatgcatatttgtttGTGTCCTGTTCAAGAGGTAACATCCGATTCCGATCAAGTCTTAAACTGCGCGATCGGGCATGATTTCCGATCACttgatcagatctggacatccatactagtttattttgtattttgtggcTTCTAATTATGTCTTACCTGTTGTCTGGAATCGTTCCTCACCAAACTTGAACCCCATCATCCCAGTCAACTCAAATCCTCCCACATCTGCGGCGAGCAACTagtaaagtctagattggatacGCAGCCGGCCAGAAGTGCgctatgcacatcaatatagcagcatttttatgacactgtataacaataagtTATATTTTAACAGTTCTGGGacggttgggttttgggttggggtgggggtagacattaaacaatacaattaattgggtaatttaatagatagtaTGAATAATACTTGGACAACTACtgatttacattactgtgatgcttgggtttagggttgtggtggggtagacgttattaaaatacattaaacaggaattttaatgaataatataaataattcttgttgaCTTCTGGCCGCGAACGTATCTGATCTTGCAACAATttaagccactggacaaactggtaacagtgggaaagctatCGATatggaggtaaacggtcagctgtTGAGCATGAAGTGGAACAGCGTCTTAGCgccccgtagcgtttgttttaaaaatagtgCAGACATGCATTcccctggctacataatttgtggtctccaaaaatatatatagggctacattttcagaatgaccgTATGATGCAAAAGTCTATGATACGCTGATCCTATTAACAAGTTTCAAATAGTTTTCaggttctttatttttttattttttataattactttttagggttttttcacctttattatgacaggacagtagagaattcagacaggaaagcattgggagcagagagagaggaaggatcggcaaaggacctcgagtctggaatcgaactcgggtcgccgtgagcatgTTGGTGCTATATATCAGTGcgcagtaccactaggctactggcGCCGACAGTTTTCAGgttctttattgtgttgtttttccaGAACAGTGCATAAATACAAGGACAAAACGAAACTGTAAATCTGACATGGAAAAATTTGAAAGCATTCACATATAGGATAtaaggttgggcgatgtcgaacaatttggcatcgtatgatgtcTTATGTGAAACATCGCTTTGGACTATATCTTCGTCATTGTAGgaggcggtgaattaattatttatgaataattagttAACTCACAActgattaattatttgtagcctaccatttcaactactTGACCCTTActtataaccaaatcataaaGAGATAAAGATGAGTTACACAAAAtataccacctgtcaatcactttttccgcggaactctggcatgaataggcagagtgatctttGTCGTTATAATGGtattgacaaacttggttggtaaaaaaaggtgcaGGAACCAGCCATCAGTATATGAGGTTTattgctaaaattactaagtacaagcgtaaaagcgaaagattgaagcagtgtactgacgctgtgacacgtaaCCTGATTGattcgttagatagagacaagattgaTTAAAGATCACGTTTAATAACTTAagtgagacgcaatccagcggtacatccttgataaactgtccgacataCACTGCTCTCttgggttttgtgctcaaagcacccgctgactacTTGGAGCTCAGACGTCCGCATATGCTGcagcgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgcgtgtgtgtgcgtgtgtgtgtgtgtgtgtatggtcacgtgatgtgcatatTCAGCAGTATAGagggagatcttttcagaaacgccagtgtggacgtggatcatttttgttcttAAATGCCATTCTAAAACTAAGACTATTAGTGTAAAACGGGACCTAAGTGGGTATTTTTCGCGAGCATGTTAATGCTGCGATGGGGTGGGGGGAGGATTgagatgccggctcagcattgtgatgtctattggccatcgacCCAATCCTAATAGGACAAACACATTTTATTGTCCATATCAGTAATTTAAAAGCTCCTTTGAAACAAACTGTCCATCTGTGACTTTATTGACTTGAATGAATTGTAAAGATGAGAAAAGTCCATTATATTAACGAGTTGTAGGTagcacatttattttataatatgtgTGCTTAATATGTACTAGGTTTGGGTTCAAGGGTAGTTTTAAGTGTAGTAGTTCTTACCCAATTTATGTAATGATTATAAGTAGGTAGTATGTACATGAGTAACAGGACTGTAAAATGGAGTGCTACCAAGGTTTATGGCAACATTAGTAAGCATTATTCAGCGAAACACCACAGTGTTTTCTTCAGATCCAGCACCTATAAAATGATGCCAGATTTAGATTAGGTGAATGTGTTGTTAGTAGTAGTATGGCTGATGTGAAATGGATGCATTTTCCATTATGTTTGGAGGCAGGAAAAGTGCTgaatctcattcatttatttttctttggctaagtcatttatctggggttgccacagtggaatgaaccagcaattAATCCAGCTTAGttcccttccaaccacaacccagtactgggaaagtgTTGAATCTCTGAAATAGTTTATTCCAAGTGTTATTgtgaaacaaaatacaataattagtcaTTTAATTCATGATTCTGATTATTCATTTTGAGTTTCTGACTTATATTTGTAGTTATTTAGTTCTTTTAGCAGAAATGGTTGTCTTCATGCTCtgataacaaaacaaataaaataaaaaagtagtaaaaGAA
>TCONS_00018639
AACTGATGTCCCTCTGCTAACAGTTCATCAATAAAGGTTGGGAGTATCCTGCGAAAGAGACAAAGTCTGCGAGTAAACGCTTTGTGtgagagagactgctgaagatggAGTTTTTTGAAGTGGAGATCGACCTGAGTGAGCTAGAACAATCCACAGTGAGTGATGAAGAAGATATCGAGGAACAAGCAGATCAAGAATTAAATGAAGATGAAGACGATGAAGAggatgaggatgaagatgaagatgatgatgatgatgatgatgatgatgatgatgaagatgaagatgaagatgaataTTATAAATCAAAGAAAACTCCAAAAACATCCAAAACGCTGCACACCTGCTCACAGTGTGGAAAGAATTATAAGCATATATCCTCTCTCAGAATTCACCTGCTCagtcacactggagaaaagcctttCCACTGTGATCAGTGTGAGAAGACATACAGCACCCTTTCAGGCCTGAAAATTCACCAGGTTGTTCACTTCAGCGAGAGGCCTTACTCCTGCTCGGTCTGCGGACGGAGCTTCTCCCGCTTGGACAGCTGCAAACAACATCAGAAAACGCACGATAAAGTGCGAGATCACGTGTGCACCGAGTGCGGGAAGAGCTTTACCACGTTCAGCCAGCTCAAACAGCATCAGATCATTCATTCTGGATTAAAACCGTTCAAGTGCTCCTACTGTGACCGGAGTTTCACCCAGGCCGGAAACAGGAAGTCTCACGAGcggattcacaccggagaaaaGCCGCATCGGTGTACTGAGTGCGGAAGGAGTTATAAAGATCTGACGGGTCTTAAAAATCACATGCGCGTTCACTCCGGGGAAAAGCAGTATGTGTGTGAACACTGCGGGAAAGGGTTTAATTCGGTGTCAAATATGCGGTACCACCTGAGAGTCCATACCAATGAGAAACCGCACGTGTGCTCCGTCTGTGGCAGGGGGTTTTCGCTGCTGGTCAGTTGTACGTTGCACGAAAAAATACACACAGGTGAGAAGGATAAAGTGTGCGATGATTGCGGGAAAAGCTTCGTCACTAATGGTCAGTTGAAACGACACAGAGTCGTTCATTCTGGAAAGAGACCGTACCAGTGCTCGTATTGCGAGAAGAGTTTTTCGGTGTCGGCGCATCTGAAAATACACATGCGACTTCACACTGGCGAGATGCCGTACCGCTGTGCTGACTGCGGAGAGAGTTTTCGACATTCAAACTCGTTAGCCATTCATAGGAGAAAACACGATCAGCCGGAGCAAAGTCCTCCTGTTCATACAGTTAGCTAA

Function

symbol description
si:ch211-276c2.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-423 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000053800

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018638 False 6355 mRNA 0.39 3 41693635 41708657
TCONS_00018639 True 1289 mRNA 0.47 2 41697758 41700406

Neighbor

gene id symbol gene type direction distance location
XLOC_009484 spsb4b coding downstream 3654 41670742 ~ 41689981 (-)
XLOC_009483 NA coding downstream 26280 41640441 ~ 41667355 (-)
XLOC_009482 CR925731.1 coding downstream 150195 41529260 ~ 41543440 (-)
XLOC_009481 si:ch211-187g4.1 coding downstream 206842 41471175 ~ 41486793 (-)
XLOC_009480 nlrc8 coding downstream 254814 41422248 ~ 41438821 (-)
XLOC_009486 ftr90 coding upstream 3070 41711727 ~ 41744848 (-)
XLOC_009487 ftr76 coding upstream 8064 41716721 ~ 41720215 (-)
XLOC_009488 ftr73 coding upstream 38063 41746720 ~ 41749364 (-)
XLOC_009489 ftr72 coding upstream 43678 41752335 ~ 41756507 (-)
XLOC_009490 ftr91 coding upstream 48785 41757442 ~ 41762565 (-)
XLOC_009478 CR854897.2 non-coding downstream 297562 41393401 ~ 41396073 (-)
XLOC_009474 NA non-coding downstream 447626 41238245 ~ 41246009 (-)
XLOC_009472 NA non-coding downstream 621438 41068774 ~ 41072197 (-)
XLOC_009494 NA non-coding upstream 345182 42053839 ~ 42058846 (-)
XLOC_009495 CR925728.2 non-coding upstream 355526 42064183 ~ 42066345 (-)
XLOC_009496 CR925728.1 non-coding upstream 371737 42080394 ~ 42086212 (-)
XLOC_009497 NA non-coding upstream 396785 42105442 ~ 42106950 (-)
XLOC_009498 LO018107.1 non-coding upstream 427430 42136087 ~ 42139836 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G397492 NA non-coding CI01000239 null 365206 ~ 373149 (+)