Item | Value |
---|---|
gene id | G203713 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000047 |
NCBI id | null |
chromosome length | 7523058 |
location | 5644335 ~ 5644537 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU231192 | True | 203 | lncRNA | 0.38 | 1 | 5644335 | 5644537 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000047_05546059_05547988 | SOX9A | coding | downstream | 95979 | 5544781 ~ 5548356 (-) |
CI01000047_05247473_05248489 | SSTR5 | coding | downstream | 395654 | 5246963 ~ 5248681 (-) |
CI01000047_05235089_05236228 | SSTR2A | coding | downstream | 408062 | 5234144 ~ 5236273 (-) |
CI01000047_05219313_05222967 | NA | coding | downstream | 421345 | 5219190 ~ 5222990 (-) |
CI01000047_05151314_05157285 | NT5M | coding | downstream | 485941 | 5149719 ~ 5158394 (-) |
CI01000047_05805272_05807974 | NA | coding | upstream | 160735 | 5805272 ~ 5807974 (-) |
CI01000047_05862382_05868129 | NA | coding | upstream | 217288 | 5861825 ~ 5868679 (-) |
CI01000047_05869347_05869519 | NA | coding | upstream | 224747 | 5869284 ~ 5869519 (-) |
CI01000047_05958264_05971163 | MAPK8B, MAPK8, MAPK8A | coding | upstream | 313354 | 5957891 ~ 5971163 (-) |
CI01000047_06139714_06142702 | UBTD1, UBTD1A, UBTD1B | coding | upstream | 495080 | 6139617 ~ 6142702 (-) |
G203712 | NA | non-coding | downstream | 1368 | 5642745 ~ 5642967 (-) |
G203709 | NA | non-coding | downstream | 5682 | 5638443 ~ 5638653 (-) |
G203576 | NA | non-coding | downstream | 250998 | 5393098 ~ 5393337 (-) |
G203574 | NA | non-coding | downstream | 253323 | 5390722 ~ 5391012 (-) |
G203417 | NA | non-coding | downstream | 256292 | 5387092 ~ 5388043 (-) |
G203719 | NA | non-coding | upstream | 8208 | 5652745 ~ 5652958 (-) |
G203720 | NA | non-coding | upstream | 8480 | 5653017 ~ 5654088 (-) |
G203752 | NA | non-coding | upstream | 106264 | 5750801 ~ 5953288 (-) |
G203764 | NA | non-coding | upstream | 158599 | 5803136 ~ 5804158 (-) |
G203853 | NA | non-coding | upstream | 331373 | 5975910 ~ 5976256 (-) |
G203286 | NA | other | downstream | 767601 | 4874379 ~ 4876734 (-) |
CI01000047_04575184_04576337 | GNGT2B, GNGT2 | other | downstream | 1067370 | 4574335 ~ 4576342 (-) |
CI01000047_04285605_04286644 | COA3A | other | downstream | 1357654 | 4285227 ~ 4286694 (-) |
CI01000047_04213574_04213976 | NA | other | downstream | 1429905 | 4213409 ~ 4214085 (-) |
G202944 | NA | other | downstream | 1657933 | 3985342 ~ 3986402 (-) |
G203840 | NA | other | upstream | 273971 | 5918508 ~ 5927344 (-) |
G203881 | NA | other | upstream | 398716 | 6043253 ~ 6043789 (-) |