G202113


Basic Information

Item Value
gene id G202113
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5879824 ~ 5882797 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU229338
TGCAAAACAACCAATGTTAGAGACAGACATGAAAAGACGTAAAAATGCCTGAAGGTGCAAGATTCTGCTCAGCCTTCTGCTTTATCTTCACCATTGATTGCTTGTTGGTGACACGTGTGAAGGGACAAGACTCTTCCAATGATGAACCAGAAATTAAATATGCTGTCATAGGAGCAGGGATTGGCCTTTTCTTCTCCATCTGCTTTCTGCTAATGAAAATCTACATAATCAAAAAGCAGATGGTTGACAATGAACCATCAGATGTATCAGAAAGAAGAGCATCTTCACGGGCCAATGATGTGGAAAGCAGGAGGGACTGAAATGTCTTTTGAGGATTAATTAATATTATGATATTATGCTCAGAGGAGAACACAATCAAATGTCATTTTATGACAGATTTTATACTGATTTATTTATTAAATAGTGGCCAATTTAGGCCTGAACAATAAATGTTTGAATATTCAGCATGTGCCTTCATGAGGACTTTTTGTGCTTTTTACACTGAGAGCCACAACTGCTCTTACATGAGTAAAATGTATATATTTATATACATCAACTAATATACTGCATGTATCAAGAGCACAAGAGGTTTAAGCCAGCTTGTCTTTTAATTTCTTTGCCTCTGTTGTGTGACAATTTCTATGCATAATCAAACTGTGTTTGTAATTATCAATAAAAAATGAACAGCTCCTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU229338 True 693 lncRNA 0.36 5 5879824 5882797

Neighbor

gene id symbol gene type direction distance location
CI01000047_05856549_05859800 NA coding upstream 19882 5856115 ~ 5859942 (+)
CI01000047_05468225_05478050 NA coding upstream 401204 5467089 ~ 5479506 (+)
CI01000047_05438344_05441756 NA coding upstream 437537 5435541 ~ 5442287 (+)
CI01000047_05380032_05387598 SLC39A11 coding upstream 491572 5379365 ~ 5388252 (+)
CI01000047_05339574_05340802 NA coding upstream 538952 5337685 ~ 5340872 (+)
CI01000047_05887388_05899310 VSTM4B coding downstream 3425 5886222 ~ 5899612 (+)
CI01000047_05911739_05912506 LRRC18B, LRRC18 coding downstream 28842 5911639 ~ 5914944 (+)
CI01000047_05927095_05951348 ARHGAP22 coding downstream 44298 5927095 ~ 5951356 (+)
CI01000047_05983785_06007139 FRMPD2 coding downstream 100988 5983785 ~ 6007342 (+)
CI01000047_06045320_06049402 NA coding downstream 161905 6044702 ~ 6049687 (+)
G202111 NA non-coding upstream 10093 5861887 ~ 5869731 (+)
G202033 NA non-coding upstream 224804 5654748 ~ 5655020 (+)
G202030 NA non-coding upstream 229251 5650366 ~ 5650573 (+)
G202021 NA non-coding upstream 247406 5632215 ~ 5632418 (+)
G201959 NA non-coding upstream 254718 5525802 ~ 5625106 (+)
G202063 NA non-coding downstream 72442 5955239 ~ 5958404 (+)
G202125 NA non-coding downstream 93189 5975986 ~ 5976266 (+)
G202126 NA non-coding downstream 93857 5976654 ~ 5977045 (+)
G202174 NA non-coding downstream 103734 5986531 ~ 5986834 (+)
G202175 NA non-coding downstream 106662 5989459 ~ 5989811 (+)
G201599 NA other upstream 1397367 4415813 ~ 4482457 (+)
G201387 NA other upstream 2177964 3696516 ~ 3701860 (+)
G201186 NA other upstream 2791637 3018705 ~ 3088187 (+)
G200076 NA other upstream 3301827 2520596 ~ 2577997 (+)
G200003 NA other upstream 3560862 2316863 ~ 2318962 (+)
G202382 NA other downstream 932920 6815717 ~ 6816118 (+)

Expression


Co-expression Network