G203840


Basic Information

Item Value
gene id G203840
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 5918508 ~ 5927344 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU231342
CTGTGGTTTGGTCTCCTCCTCATCCTTATAGAAGTAGAGATGGTCAGCACGCAGCACAAACCAGCGCAGCTGCCAATTCTTCATGATGCTCCTCTGCTTCTTCAGCCAGCCAGCCTTTAGCACCCCCTCTTGGAGACTTGGAGAGGTGGGTCGACATGAGCCACGTGATGGCTCTCCCATCACCATGCTCTTGGACCTGGCTCTCCTGGTCTGTCTGATCTTTGGACTCAGCATGGCTGCCATCGATGGGTTTCACTTCCTCTGCTCTGCATATTCCTCCTCCTCAGATCTTCTCTCGGTACATTCTCTCTCCTGCTCCTCTGCTCCGTGGCTCCCTCTTCCTCTCCTCCTCGCTCTCTCCTCTCTTCCCCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU231342 True 373 TUCP 0.55 2 5918508 5927344

Neighbor

gene id symbol gene type direction distance location
CI01000047_05869347_05869519 NA coding downstream 48989 5869284 ~ 5869519 (-)
CI01000047_05862382_05868129 NA coding downstream 49829 5861825 ~ 5868679 (-)
CI01000047_05805272_05807974 NA coding downstream 110534 5805272 ~ 5807974 (-)
CI01000047_05546059_05547988 SOX9A coding downstream 370152 5544781 ~ 5548356 (-)
CI01000047_05247473_05248489 SSTR5 coding downstream 669827 5246963 ~ 5248681 (-)
CI01000047_05958264_05971163 MAPK8B, MAPK8, MAPK8A coding upstream 30547 5957891 ~ 5971163 (-)
CI01000047_06139714_06142702 UBTD1, UBTD1A, UBTD1B coding upstream 212273 6139617 ~ 6142702 (-)
CI01000047_06184569_06194319 ZDHHC16 coding upstream 256728 6184072 ~ 6195664 (-)
CI01000047_06216778_06234561 FAM20A coding upstream 288282 6215626 ~ 6235272 (-)
CI01000047_06242992_06270894 NA coding upstream 315383 6242727 ~ 6272791 (-)
G203764 NA non-coding downstream 114350 5803136 ~ 5804158 (-)
G203720 NA non-coding downstream 264420 5653017 ~ 5654088 (-)
G203719 NA non-coding downstream 265550 5652745 ~ 5652958 (-)
G203713 NA non-coding downstream 273971 5644335 ~ 5644537 (-)
G203712 NA non-coding downstream 275541 5642745 ~ 5642967 (-)
G203853 NA non-coding upstream 48566 5975910 ~ 5976256 (-)
G203857 NA non-coding upstream 53456 5980800 ~ 5981561 (-)
G203858 NA non-coding upstream 55400 5982744 ~ 5983064 (-)
G203859 NA non-coding upstream 57237 5984581 ~ 5984887 (-)
G203861 NA non-coding upstream 64433 5991777 ~ 5992089 (-)
G203286 NA other downstream 1041774 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 1341543 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 1631827 4285227 ~ 4286694 (-)
CI01000047_04213574_04213976 NA other downstream 1704078 4213409 ~ 4214085 (-)
G202944 NA other downstream 1932106 3985342 ~ 3986402 (-)
G203881 NA other upstream 115909 6043253 ~ 6043789 (-)

Expression


Co-expression Network