Item | Value |
---|---|
gene id | G203884 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000047 |
NCBI id | null |
chromosome length | 7523058 |
location | 6055469 ~ 6056471 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU231394 | True | 1003 | lncRNA | 0.33 | 1 | 6055469 | 6056471 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000047_05958264_05971163 | MAPK8B, MAPK8, MAPK8A | coding | downstream | 84306 | 5957891 ~ 5971163 (-) |
CI01000047_05869347_05869519 | NA | coding | downstream | 185950 | 5869284 ~ 5869519 (-) |
CI01000047_05862382_05868129 | NA | coding | downstream | 186790 | 5861825 ~ 5868679 (-) |
CI01000047_05805272_05807974 | NA | coding | downstream | 247495 | 5805272 ~ 5807974 (-) |
CI01000047_05546059_05547988 | SOX9A | coding | downstream | 507113 | 5544781 ~ 5548356 (-) |
CI01000047_06139714_06142702 | UBTD1, UBTD1A, UBTD1B | coding | upstream | 83146 | 6139617 ~ 6142702 (-) |
CI01000047_06184569_06194319 | ZDHHC16 | coding | upstream | 127601 | 6184072 ~ 6195664 (-) |
CI01000047_06216778_06234561 | FAM20A | coding | upstream | 159155 | 6215626 ~ 6235272 (-) |
CI01000047_06242992_06270894 | NA | coding | upstream | 186256 | 6242727 ~ 6272791 (-) |
CI01000047_06302441_06309359 | DCXR | coding | upstream | 245970 | 6302441 ~ 6309359 (-) |
G203878 | NA | non-coding | downstream | 20149 | 6035036 ~ 6035320 (-) |
G203876 | NA | non-coding | downstream | 25564 | 6029589 ~ 6029905 (-) |
G203861 | NA | non-coding | downstream | 63380 | 5991777 ~ 5992089 (-) |
G203859 | NA | non-coding | downstream | 70582 | 5984581 ~ 5984887 (-) |
G203858 | NA | non-coding | downstream | 72405 | 5982744 ~ 5983064 (-) |
G203888 | NA | non-coding | upstream | 5059 | 6061530 ~ 6061952 (-) |
G203855 | NA | non-coding | upstream | 78246 | 6134717 ~ 6137099 (-) |
G204005 | NA | non-coding | upstream | 288763 | 6345234 ~ 6345473 (-) |
G204010 | NA | non-coding | upstream | 309904 | 6366375 ~ 6366652 (-) |
G204012 | NA | non-coding | upstream | 318148 | 6374619 ~ 6414242 (-) |
G203881 | NA | other | downstream | 11680 | 6043253 ~ 6043789 (-) |
G203840 | NA | other | downstream | 128125 | 5918508 ~ 5927344 (-) |
G203286 | NA | other | downstream | 1178735 | 4874379 ~ 4876734 (-) |
CI01000047_04575184_04576337 | GNGT2B, GNGT2 | other | downstream | 1478504 | 4574335 ~ 4576342 (-) |
CI01000047_04285605_04286644 | COA3A | other | downstream | 1768788 | 4285227 ~ 4286694 (-) |