G203946


Basic Information

Item Value
gene id G203946
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6568997 ~ 6573581 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU231472
TTTTGACTCATAATTTCGCCTTGTCATCTGATAATTATGACAGTGTGTAAGTTTGACTTTTTGTGTCATTTTTATGTTATGATTTTTTACTTTTTCCTTATGTGGCGGAAATGGGCTTCCGGTCACATTAGCGTAAATTCAGCAAATTTTTGTGGCCGAAAAGATCTGTTGTCTGTCGTCAAAACTGCTCTCACAGAAGTCACTTTCGAACAGAGCACCTTTCTGTTTGTACGGCGAATTCGCGTGACAAACTTGAAAATGAGCGAAATCTTTGCTGTGGATTCCTTTTGAAATGACTGAAATTCGCCCACGAAAATTCGCTGAGCAACGGTAAATGTGACCGCATCTTTAAACGCAAAAAATGACGAATTTAGTTTGTGTTCGGTGTCTGTTTGATTCTCCGCTCGCTCGACTAACATTCCTAACAGAGATTTGCGTGTTTAGAAGTCTGCGAAGAAACGTTGCACTGAAACTGTGAAATACCGCGCAGGTTGTGCTTTCTAACGCGCAATGAACCAATACACGAGTGGATTGAAAGCTCGAATCCACTTCCAGCTCGGGAAGAAACACGAGGGCTTCCCCAAAATGTCTCTAAAGCAATATATGAAGCAAAAAAGAAAGGAGAATATCTGGGATCTTCATTCTTGTGAGGAATTTATCAAAATCATTTCTGTGAATAAGCAAACTAAGAATTGGGACGTTTATGAGAGCGGATGATGTTGGCTGTGGTACTATGTGTGTTTGAGATTTGCTACGTACGAAATTACGAATTTAGATGTTTTGTTATTTAAATCCTAATTTACTTAATGTTCAGTATGTGCAACAAAACGAAAGGTTTTGCCGAGGTTTATGACACTTGAACGTGTCACAGATATCGCATGTACTCGAAGTGTTTATAAATCTGACTTGTAGACTGTTGTTTTTAATTAATTGTTCTTAATTTATCAGGATTCTTAGTATTCAGAAATATATATTTTTTCAGTTGATATAGTGATTAACAAACATCAATATTTTTAATTTAATTTTAGTACTTTAGCACAGTTGTGCCAAACTTATTTTTTAATGTGGCTGAAAAGACGTGAAGGTCAGCTGCTGCTCCATGACGAACATTAATTGAAAACTATGGACAACGTTTTATTCATGATGTTATTTTTCATTTCTCAGAGTTCGGCTGTGATTTCTTTATGACATTTCTGTTGCAAAAAAAACAAAAACAAAAAAAACCTTGTACCTTCTGTACTGGTTGTAGTGGTGAACAACATACAGTATCTATTGAAGACTGACAGGTTGAAAAGACGTATTTTTGCCTATTGTACAATTTTTTTGGTGTTCCCCCTTTAAAGTATTATCTTATATATTTTCTACATTGGTTTAAATTGAAATGCAAAACAACGAGCGCAAATTTGCGCAAGCAAACATAATAACTGCATGATGTTGATGAAAACATTGAAAACAAGTGTTTTAAGATATGTGAGAATTGATGTAATGTGAAATTTTTTGCTGTCACAATTGCATAATGTTTCAGAGTGAAATTTTTAGTAGATGACATAGGGCAAAACATCAAGCCAGCCAAATGAATTGTTCGTTTTGTTGTCGTGTTTGTATGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTTATTTCTCACTGAGCTCAAGAACTACCTGATAAAGCCTGTGCGTGTCAAACACATGTGCGCCGCTGCTGTCATATACTGAAACCCATCATTTTCAGGTCAGAATGAAAGGGAAGACTTACTGAAAAGTTCAGGAAACGTTCTGGCAAGGTTCCCTCAAAGTTATGAACAAACATTCCTCCAGTAACGTTAATAGAACATTTGCATAAACTGCTTAGACTACTCATAAAAGTTTTTCTTCAAGAATGGTCCTAGCTTTTTAATGTTAGTTAGATATAAAGGTAGATTGGTCTAATTTGAATGGGAAAAGTAAGACTGATTACCTCTTACTAACAAAGGTGCAATAGGTGATTCTCTACAGAAACGTGTTTTGTAATGCTGGTTGAAAGTCTCCTCATATCCTGACAGCAATCACTATAAGCGGACTAAATGTATTTTTATAAATATATATCGTCTGTGGAAGGCATAGGACCATAAAATGTTCCTTCATTGCATTCGGTCCGTATTAAATGATAGCATGGTTTCAGGGTTGGCCAGGTTTTCACAACAAAATTGCTACTCAAAACTAGCCCAATCGCATTGCAGGGACCCGCCGGTAAAAAACACGTTCTAGGGGGTAAAATCTGCATTTTTGGTGGGATTCCCCTGGTAAAATGTGCATTCTAGGTGCTAAATATCATGTTATTTGGGGTCGCTTCAACCCACGGACATGTAAAACAACCTGCGGCAACAGTGTTAAAGTAGCCCAATTCCGCAGGAAAACCACGGACAACAATGCATGTGTTCCTGTGTTTGCATACCACTGCGCAGCCTGTTTGCACAGACATCATACGTCATCAGCGGCTTCACGTACACTGTGCAGACAGAGCGAGAATGGCAGGCACACAGCAACAACCTAACTTTAGTTTAGTAGTACTGTTACTCACTGTACTGTAAAGTTTTCTGACTGGTGAATGACAAATGATGTAACCCAATAACGTTGTCTCTGGTCATATCGTTTCTGGTCTGTGCGCATTCATGTGTTTTGGAGGAGGCGTGGCTTTGGACGGGATAAATAACTCAACCTTTGGGTTGTTACGTCTGACCCAGGAGCTGGGTAACACAAAAACTACCCAAACACTGGGTTGTTACAGCCGACCCAGGATCTGGGTAACACAAAAACTACCCAAACACTGGGTTGTTACGTCTGACCCAGGATCTGGGTAACACAAAAACTACCCAGTCACTGGGTTGTTACGTCTGACCCAGGATCTGGGTAACACAAAAACTACCCAAACACTGGGTTGTTACGTCCGACCCAGGAGCTGGGTAACACAAAAACGACCCAGTCACTGGGATGTTACGTCTGACCCAGAATCTGGGTAACACAAAAACTACCTAAACACTGGGTTGTTACGTCCGACCCAGGAGCTGGGTAACACAAAAACTACCCAAACACTGGGTTGTTACAGCCGACCCAGGATCTGGGTAACACAAAAACTACCTAAACCCTGGGTTGTTACGGCCGACCCAGGATCTGGGTAACACAAAAACTACCCAGTCACTGGGTTGTTACGTCTGACCCAGGAGCTGGGTAACACAAAAACTACCTAAACCCTGGGTTGTTACGGCCGACCCAGGATCTGGGTAACACAAAAACTACCCAAACACTGGGTTGTTACGTCCGACCCAGGAGCTGGGTAACACAAAAACGACCCAGTCACTGGGATGTTACGTCTGACCCAGGAGCTGGGTAACACAAAAACGACCCAAACTCTGGAAAAATAACCCCAAAAATTTACCCAAAAGGCTCAACCCAGGACTTGGGTAGAAAAAATAACCCAAGATTTTTTAGAGTGTATGCTTTCAATGCTAACAGGCTAAAGTTAGCATTTCCCAGATCACCTACTGCACCTTTAACTATCTAAACTGCTAGTTGGTCAAACATAGTGGCTAAGTTTATGCAACTGGTTTAATTTTCTGCAAAACGTTAGCACAAAAACATCATTCATGGAGTGTTTTTTCCCCCCCCTGAAATGTTTAAATAATATTACTTACAACTTATTTCAGAAAGCTCAGAAAAAATTCAAAAGTAATGTTCCCCTAAAATGTAACATTAAATTTTTTCTGTAACATTTGTGTAACCAAGAAAAAAAAAACTGAATGTTTTTTTTAAATAACGTTCAGAAATAATGTTTTCATAACGTAATGGGAACGTTGGCAAAACGTTCTTAGAATATATTTTGTTTGCTGGGCGAAGGCCTTGAAAACAAACAAAAGGGGTGTTTTTTGGAATTGGTATAGTTTGTCTTAATATGTGTTTTATTTTATGCTACACGTCTGCATGAGCTTTCAACATGTATTGGGAGTATGTTCTGAGACGCTTATAGTTGTATCACTCTCTTTGCATTAAAAGTGGCCCAGCAGTGTAGGAAAACAGAAATATCATGTTCTTACATATCGTAGACATGCAACGACACTTACTGACCATGTTTTTATTTTAATAACAAATGAAAAGACCTGGAGATTTTGTGATCGTGCTGAAGTGTTTTGGTTTATGGTGATCGTTTTGATTTGATTTTAGCTGTCGGTGGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU231472 True 4214 lncRNA 0.39 3 6568997 6573581

Neighbor

gene id symbol gene type direction distance location
CI01000047_06487774_06496807 DHRS7CB, DHRS7C coding downstream 72190 6487715 ~ 6496807 (-)
CI01000047_06436919_06455480 HS3ST3A1 coding downstream 113180 6436347 ~ 6455817 (-)
CI01000047_06337531_06343900 GLP2R coding downstream 224983 6337093 ~ 6344014 (-)
CI01000047_06327240_06328630 PTS coding downstream 240367 6326771 ~ 6328630 (-)
CI01000047_06312165_06320684 NA coding downstream 247497 6311168 ~ 6321500 (-)
CI01000047_06574147_06577660 BSK146 coding upstream 467 6574048 ~ 6577979 (-)
CI01000047_06587350_06593162 NA coding upstream 13509 6587090 ~ 6593162 (-)
CI01000047_06644025_06659494 SULT2ST1, SULT2ST2 coding upstream 70169 6643750 ~ 6659694 (-)
CI01000047_06660338_06666635 SULT2ST1, SULT2ST2 coding upstream 86719 6660300 ~ 6666635 (-)
CI01000047_06667661_06692521 NA coding upstream 93639 6667220 ~ 6692521 (-)
G203963 NA non-coding downstream 16826 6550190 ~ 6552171 (-)
G203942 NA non-coding downstream 22933 6540025 ~ 6546064 (-)
G204031 NA non-coding downstream 102778 6464440 ~ 6466219 (-)
G204012 NA non-coding downstream 154755 6374619 ~ 6414242 (-)
G204010 NA non-coding downstream 202345 6366375 ~ 6366652 (-)
G203924 NA non-coding upstream 133088 6706669 ~ 6751591 (-)
G204069 NA non-coding upstream 134527 6708108 ~ 6708823 (-)
G203919 NA non-coding upstream 174587 6748168 ~ 6773497 (-)
G203930 NA non-coding upstream 180208 6753789 ~ 6756733 (-)
G204095 NA non-coding upstream 276121 6849702 ~ 6850132 (-)
G203881 NA other downstream 525208 6043253 ~ 6043789 (-)
G203840 NA other downstream 641653 5918508 ~ 5927344 (-)
G203286 NA other downstream 1692263 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 1992032 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 2282316 4285227 ~ 4286694 (-)

Expression


Co-expression Network