G203930


Basic Information

Item Value
gene id G203930
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6753789 ~ 6756733 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU231456
AGTAAATCAAGGCCAGAGGGCCAATGACCAGCGCGAATATGGGAGTGCTGCAAATGATAACAATCATGGTGGACACAGAGGCAAAGAAGGTGCCCAGGAACATGAGGACTGTGGATGGAAGAACCTCATCGATCACGTAAATGTCCTTGGAGAAACGGTTGATGATCCGGCCTATGGGAGTGGTATCAAAGAAAGACTGGGGCGTGTGAAATTTGTTGTCCAGCAGGGCCTGATGCAGCTTGCGTGAGCCCTGGATTTTCCCCAGAGCCAGAGTAAAGGAGGAAAACATGACCAGGATGCCTGTGTTAGAGAGACCAGAGGAGGGGGACAGCGTCACTACACTACACACTCCTGCAGGGGGCGTCTGAGGGACGGAGCGCTACGAGAGCAGGAGAGCACACTCCTCACAACAAATACACACACCTGCAGCACGGGCCGCTTCACACAAAAACCTGCTGTGCTGTTACTTGTTTTTTTTTAGTGGAAGAGATTCTGAGGAATGTTAATGCTGCTCTTTTCCATATAATGAGAGATCGTACAACCCAATCGTTGGGTTAAAACATCCCAATCGCTGGATTAAAACAGCTCAATCGCTGGGTTAAAACAACCCAAATCGCTGCGTTAAATCAACCCAAATCGCTGGGTTAAAACAACCCATTCGCTGGATTAAAACAACTCAACCGCTGGGTTAAAACAACCCAAATCGCTGCGTTAAATCAACCCAAATCGCTGGGTTAAAACAACCCATTCGCTCTGTTAAATCATCCCAATATTTAGGTTAAAACATCCCAATCCCTGGGTTAAAACATTCCAATCGCTGGGTTAAAACAACCCAAATCGCTGGGTTAAATCAACCTAATCGTTGGGTTAAACATCCCAATCCCTGGGTTAAAACATTCCAATCGCTGGGTTAAATCAACCCAATCGCTGGGCTAAAACAACCCAATCGCTGGGTTAAAACATTCCAATCGCTGGGTTAAAACAACCCAATCGCTGGGTTAAAACATCCCAAGTCGCTGGGTTAAAACAACCCAAATCGCTGGGTTAAATCAACCCAATCATTGGGTTAAAACAGCTCAATCGCTGGGTTAAAACAACTCAATCGCTCTGTTAAATCATCCCAATATTTGGGTTAAAACAACCAAATCACTGGGTTAAAACATCCCATTCGCTGGGTTAAAACAACCCAATCATTGGGTTAAAACATCCCAATCGCTGGGTTAAAACAACTCAATCGCTGGGTTAAAACAACTCAATCGCTGGGTTAAAACAACTCAATTGCTCTGTTAAATCAACCCAATCGCTGGATTAAATCAACCCAATCGCTGGGTTAAAACAACCCAAATCGCTGGGTTAAAACAACCCAAATCGCTGGGTTAAATCAACCCAATCGTTGGGTTAAAACAGCTCAATCGCTGGGTTAAAACATTCCAATCGCTGGGTTAAAACAACCCATTCGCTGGGTTAAAACAACCCATTCGCTGGGTTAAAACATCCCATTCGCTGGGTTAAAACAACCCAATCATTGGGTTAAAACATCCCAATCCCTGGGTTAAAACATTCCAATTGCTGGGTTAAAAAAAACTCAATCGCTCTGTTAAATCAACCCAATCGTTGGGTTAAAACAACCCAATCGCTCTGTTAAATCATCCCAATATTTGGGTTAAAACAACCCAATCACTGGGTTAAAACATCCCATTCGCTGGGTTAAAACAACTCAATCGCTCTGTTAAATCAACCCAATCGTTGGGTTAAATCAACCCAATCGCTGGATTTGTCCATTTTTAACCCAACTTGGGTTGTTTTTAACCCAGCATTTTGTTTTTTGAGTTTAGAGCTTCGTGAAGTGTCTTTGCGAATAATTTGTTACTAAGCAGTGATTCAGAGCATCGTGATTTCAGTGAACAAGGCTGTTATGTCATGAGTGTTTCGAAGTCTTTCAAAATGTTAGTGGTCTCTGTGAACCCATGAACCAGTGTCTATATATGATTTTTACCTGATCTCAGATCAGTTTTATACATTTGTAGACATTTAATGACACATTTGTATAATAAAGAGCTGTAGTTAAAAGTCTCTTATTGGTCTGATTAACCAAGCTCTACGATTTACTAAAATAACACACATTCTACAGACACTTCATATTTAATAGTATTAGATGATTTGTTAATTGCATTTAGTAGATTACACCTTTAATAAAACATTTGCTATTGGTTTGTAAATGGTGTTTTATGCATGTTTTGACTGAGTTTTCACTGCATTTACACTGTTCTGACCAGCAGGGGTCGCCAGTGTGTTGCAAAGCAATTGGTTCAACTGATTCAAAGTTTAGTTTCTCCTATCACTAGATGGTAGTGATCAGTGCAGTCAAAAATTACATTAGAGATTTTCAGCAATTTCCAAGCTCGACAGACACGGTCACTGCAACTCTCATTAAACAGAAAAGAGTCGGTCTTTATAATCTCTGTTTTATTCCAGTGAAACAGCATATTTGTGTTTGGTGAGTAAACAGCACCGTGTTCATTTTTGTGTGAACCGTCCCTTTACCACTGACGTGAATGAAATGATATGACCAGGTGTTTGTCTGAAGAGTGTCAGTCAGTACTTGAGTTTGTCTTTGGTTAAATAACCCAACATCCACACATCACTGGAGGTGACCATACCTTGTGAAATGCCCAGTGCTGCGTACACCCCCACCCTCATCTCCACCTTCTCACGCGTTCGATTCTGCAGTGCGTCGTTCGTCCATTCGCTCAGCCAGAAGTTGGCTCCGATGGCGGCTGCGCTCTGACAGCCGTACAGGAAGCAGATGAACAGCGACAGAAGAGGCCCGACCGCTTTCATGTACTCCCAATACACCTTTAACTTCACCTGCAGCAGAGAAATACACACACAATGACAAAATGCAGTATATTTACTGTATAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU231456 True 2923 lncRNA 0.42 2 6753789 6756733

Neighbor

gene id symbol gene type direction distance location
CI01000047_06667661_06692521 NA coding downstream 61268 6667220 ~ 6692521 (-)
CI01000047_06660338_06666635 SULT2ST1, SULT2ST2 coding downstream 87154 6660300 ~ 6666635 (-)
CI01000047_06644025_06659494 SULT2ST1, SULT2ST2 coding downstream 94095 6643750 ~ 6659694 (-)
CI01000047_06587350_06593162 NA coding downstream 160627 6587090 ~ 6593162 (-)
CI01000047_06574147_06577660 BSK146 coding downstream 175810 6574048 ~ 6577979 (-)
CI01000047_06843638_06844618 TOB1A, TOB1, TOB1B coding upstream 86637 6843370 ~ 6844618 (-)
CI01000047_06900704_06954882 SPAG9 coding upstream 143971 6900704 ~ 6954882 (-)
CI01000047_06958499_06967108 DAGLB coding upstream 201250 6957983 ~ 6967834 (-)
CI01000047_06968741_06972782 ERD2, KDELR2.L, ERD22, KDELR2, KDELR1, KDELR2A, KDELR2B coding upstream 211591 6968324 ~ 6972850 (-)
CI01000047_06978552_06982232 METTL9 coding upstream 221715 6978448 ~ 6982542 (-)
G203924 NA non-coding downstream 2198 6706669 ~ 6751591 (-)
G204069 NA non-coding downstream 44966 6708108 ~ 6708823 (-)
G203946 NA non-coding downstream 180208 6568997 ~ 6573581 (-)
G203963 NA non-coding downstream 201618 6550190 ~ 6552171 (-)
G203942 NA non-coding downstream 207725 6540025 ~ 6546064 (-)
G204095 NA non-coding upstream 92969 6849702 ~ 6850132 (-)
G204097 NA non-coding upstream 94906 6851639 ~ 6851838 (-)
G204098 NA non-coding upstream 95870 6852603 ~ 6852803 (-)
G204129 NA non-coding upstream 136101 6892834 ~ 6893180 (-)
G203947 NA non-coding upstream 139268 6896001 ~ 6898152 (-)
G203881 NA other downstream 710000 6043253 ~ 6043789 (-)
G203840 NA other downstream 826445 5918508 ~ 5927344 (-)
G203286 NA other downstream 1877055 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 2176824 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 2467108 4285227 ~ 4286694 (-)

Expression


Co-expression Network