G203947


Basic Information

Item Value
gene id G203947
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 6896001 ~ 6898152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU231473
TTTGTGTTCTGAAGATGAATGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGACAGAAATTTCATTTTTGGCTGAACTAACCCTTTAAATGTGTATTTTAGATGTTTTCTTTACACTAGTCTGAAAGAGGACATGTTATGCAAGCAAAGTAGACCTCAAAACTGAGTAGTGCATGAAAAAAAACAATGGTTTTGTCTGTAGTGTCCAATAAGTAAGTTGATAGACGTTCTCCATGCAGTGATTCTCGCCACAGGAGGGCAGCAGTGAGCCGCTGCTTTACTGCCTTTGAAATGACATTCAGTGAGGAAGGAGCTGCTCCTCCCCCTTCTGTGATTGGCTGCTGGATGAGTACAAACAGTACATGTTCTGACACACACACACTATTGAACGTCTGAATCAGCACTCAGGCATTCAGTAACAGCGAGGGAAGCTCTGAACTCTGAGTGAGGAAAACTCAGAATCAAATCAACACTGATCTAGTGTTATGAGGTGCCTAACTTACAACCATCATGTTAGTCATCTAATATTCTCTTCAAGACTCGTCTTTTTAAAGATAGATCAGTCTAATTTAAATCAAAAAGTAAGACTGATTAGCTCTTGTCTAACTGATAGTTGATCAAACTAAAGTCTTAATATAGTGGCTAAGTTTATTAATCTGGCCTCTGAATAAGATTTTCTTTCTGCTGAAAATGAGTTAATGTTATCGGATTGGACTAAAACCGACAGACTTTGCTCTCACAGGGTATAACTTTTGTACTTTTTGCATTTTTTCCCCACTTTGTTACACTCGTGTTGTTCCCGGCCAAAAATGACCAGTCTATAAAAATAAAATTGCTTCTAAATCTCTCATTATTTCACTGAGGAGCCTGAGCTCAGATCCATTCACAAAAACATACAAAACCTGTGCTAACTGAAAGAAAACAAGTCCACCAAAAGATTGAATCACAAATGTGCTGATAATGAGAGATTTACAAAACACCAAATTAGGTTTTTAGCACAACAAGGGTTAAATTTGGCATGAAATGGAAGTTGCACTCGTCTTTTCTTCACTATTGTGACGTATATCTGAGTGAAACGCTTCACAAACAAGAACAAATGTAGGGCGGGGCTTGATTTTGTCTGTGGGGAATTGATTGGATGGTTGTGGTTTGCTATTGGTGGATCTCATGTGAGTGACAGGTTGCCCCGCCCTCGTCATCAGAGAAGAGAACATTTCATGGTGACTTTAAGAGTTTCACCTCTTTTCACCTCTTTCCTCAGCTCACACAATGAGGAGACGCGTGGAGCTCATCAAACATTCATCCACCTAACGCTGCGTCCCCCTCCGTCTCTCCGTCCTCCAGCTCTGCTCTGCTGTGGCTCTTATGTAACTCGTCCAGCTGGTGTGTCCAGGGATGTTTCCCAGGGCTTCACGAGCGTAATTGCCCAGATGCAGTGAGGACGCCTGAGGCTGGACTCTGCGGGGCCTTCAAACCCTCCATGAGTTTAGAGATGGACTGACCCTGGCTGATTCTTCAGTCAGTCAGTTTATAAAGCTGTACATTGATTTAAATTGTAATTTAAAAGTCCATACATACACTACTAGTCAAACTTTTGGAATAATTACATTTTATTGTGTTTTTTGAAAGAAGTTTCTTCTGCTCACCAAGGCTGCATTTGGATCATTGATAAATAAGGGTTTTAAAAGTGTGAAAAAACATAATAGAGATATAATTAATTTTGAAGTTTTATTAAGTGTTAACAATGAGATTATGTGGTTTTTATAATCAATCAACACTGATTTTGTCGTTTTTTACAAGATGGACAAAATTTGTCACCAAAAAAGTCATTCGGTTTAACCAAAATTTCAGTTTTACCGAATGAGGATATTTTCACACAATGCTAACAGGCTGATATCTAGCTAGCTAGCAAAAGGACAATCAAACATTTTATATTTAGTACAAGTTTTTAAAATATTACAACATTTTCCATGTTTTATAGCGGTTGTACCGAATGACCTGATGTTTCATGCGTATGATCAAGTGAAAACATGAATTTTTCAAATAGTTAAAAGAGAGTTAGTTACTTTGCTTCACGATCATGTGGTCCTTTGCAGGTGTCTGAATGATGTCACATCCTGTCACATGATATTGACCGCATGACTTGATCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231473 True 2152 lncRNA 0.39 1 6896001 6898152

Neighbor

gene id symbol gene type direction distance location
CI01000047_06843638_06844618 TOB1A, TOB1, TOB1B coding downstream 51383 6843370 ~ 6844618 (-)
CI01000047_06667661_06692521 NA coding downstream 203480 6667220 ~ 6692521 (-)
CI01000047_06660338_06666635 SULT2ST1, SULT2ST2 coding downstream 229366 6660300 ~ 6666635 (-)
CI01000047_06644025_06659494 SULT2ST1, SULT2ST2 coding downstream 236307 6643750 ~ 6659694 (-)
CI01000047_06587350_06593162 NA coding downstream 302839 6587090 ~ 6593162 (-)
CI01000047_06900704_06954882 SPAG9 coding upstream 2552 6900704 ~ 6954882 (-)
CI01000047_06958499_06967108 DAGLB coding upstream 59831 6957983 ~ 6967834 (-)
CI01000047_06968741_06972782 ERD2, KDELR2.L, ERD22, KDELR2, KDELR1, KDELR2A, KDELR2B coding upstream 70172 6968324 ~ 6972850 (-)
CI01000047_06978552_06982232 METTL9 coding upstream 80296 6978448 ~ 6982542 (-)
CI01000047_06993737_07007548 POLR3E coding upstream 95570 6993722 ~ 7007548 (-)
G204129 NA non-coding downstream 2821 6892834 ~ 6893180 (-)
G204098 NA non-coding downstream 43198 6852603 ~ 6852803 (-)
G204097 NA non-coding downstream 44163 6851639 ~ 6851838 (-)
G204095 NA non-coding downstream 45869 6849702 ~ 6850132 (-)
G203919 NA non-coding downstream 122504 6748168 ~ 6773497 (-)
G204139 NA non-coding upstream 119971 7018123 ~ 7018330 (-)
G204149 NA non-coding upstream 165054 7063206 ~ 7063431 (-)
G203935 NA non-coding upstream 222301 7120453 ~ 7128069 (-)
G204167 NA non-coding upstream 386387 7284539 ~ 7285427 (-)
G204175 NA non-coding upstream 398388 7296540 ~ 7296838 (-)
G203881 NA other downstream 852212 6043253 ~ 6043789 (-)
G203840 NA other downstream 968657 5918508 ~ 5927344 (-)
G203286 NA other downstream 2019267 4874379 ~ 4876734 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other downstream 2319036 4574335 ~ 4576342 (-)
CI01000047_04285605_04286644 COA3A other downstream 2609320 4285227 ~ 4286694 (-)

Expression


Co-expression Network