XLOC_009492 (epha4l)


Basic Information

Item Value
gene id XLOC_009492
gene name epha4l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41945310 ~ 42039192 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018653
ATCAGTCGCGCGGGACAGCACGAGGAATAAACAGGAATAACGGAGACACAGTTATTTTACAGCACGAATGGCGCTCATGGCCGGGATTATTTACGCTCTCACCTCGCTTTTCCTGGGGATTTGTGCAGGTCTGTCCGCTCCGAGGAGTCCTCCGGCGAATGAAGTCACGCTGCTGGATTCCAGATCAGTGCAAGGAGAGCTGGCATGGGTCGCCAGCCCGACTGAAGGAGGGTGGGAAGAGGTGAGCATCATGGATGAGAAGAACATCCCCATCAGAACCTACCAGGTGTGCAACGTGATGGAGCCCAGTCAAAACAACTGGCTCAGGACTCACTGGATACAACGCGGAGCAGCCCAGCGCATCTACATCGAGATTAAATTCACCCTACGGGACTGCAACAGCCTTCCCGGCGTCATCGGCACATGCAAAGAGACCTTCAACCTCTACTACCTGGAGTCTGACTCCGATAATGAACGATACGCTCATGAGAGCCGATTTTCAAAGATTGATACTGTAGCAGCAGACGAAAGCTTCACGCAGGTGGATATCGGCGATCGTATTATGAAACTGAACACTGAAGTTCGGGATGTTGGTGTTTTAAGCCGTGCAGGGTTTTATCTGGCCTTTCAGGATGTAGGAGCTTGCATCGCGCTGGTTTCGGTTCACGTCTTTTATAAAAAGTGTCCATTAGCCGTCAGGAACTTGGCGCAGTTTCCTGATACCGTGACTGGAGCGGATACGTCATCCCTGGTGGAGGTGCGAGGTTCATGTGTGGATCATTCAGAAGAGCAGGAGGTGCCCAAAATGTACTGCGGTGCAGATGGGGAGTGGCTGGTGCCCATTGGGAATTGTCTGTGTAACCCTGGATATGAGGAGCGGATCGAGCAGTGTCAAGTGTGTAAGGTGGGCTACTACAGGTCTCTTTCTTCAGACGTGGGCTGCCGTAAATGTCCGCTGCACAGTTACTCTGTGAAAGAAGGAGCCACTTCCTGTGATTGTGACAAAGGATATTACAGATCAGAGACGGATCCAGCTGCCATGCCTTGCACACGTCCTCCGTCTGCTCCACACAATCTGATCTCCAATGTGAACGAGACGTCGGTGTTATTGGATTGGAGTCCTCCTCTGTCCTCCGGAGGTCGTCAGGATCTCACCTATAATGTGGTGTGTAAGCAATGTGTGCGGGACACGCAGAGATGCTCGCCGTGCGGAGATGACGTGCGATACTCTCCGCAGCGGCTCAGTCTGCGCTCCACGCGGGTGTCCGTTCACCAGCTGCAGGCCCACACCAACTACACCTTCCAGATCTGGGCCATCAACGGGGTGTCCAAACACAACCCCAGCCCGGAGCAGGCCGTGTCTGTCACTCTCACCACCAACCAGGCCGCTCCGTCTATGGTCATGTCTGTTCAGAGTAAGGACATCACGCGGCACACGCTCGCTCTGTTCTGGGACCAGCCCGAAAAACCCAACGGCGTCATTCTGGAGTATGAGGTCAAATACTACGAGAAGGATCAGAATGAGCGGAGTTATCGTATTGTGAAGACGACTTCTCGAAATGCTGATATTAAGGATCTGACCCCGCTGACCTCATACGTGTTTCACGTACGCGCTCGCACCGCAGCAGGATATGGAGATTTCAGTGCACCCTTTGAGTTCAGCACCAACACTGTGGCAGCTCCTGTTGTTGGAGGAGTCATGAGCTCTGCAGTGCTGCTGCTTCTGGTAGCTGGATGTGTGGTGGTTCTGCTGCTCATCCTCATTATCACCTTCATCTTCACTAAAAGGAGGAGCAAATACAGTAAAACTAAGCAGGGCGAGGATAAAAACGTGCAGCAAGGGGTGAGAATATACGTAGACCCTTTCACCTATGAAGATCCCAACCAGGCCATCAGAGAGTTTGCGAAGGAGATCAATACGTCCTGCATCAAGATCGAGAAGGTGATCGGCATCGGTGAGTTTGGCGAGGTGTGCAGTGGCCGTCTGAAGCTGCCAGGAAAGAGAGAGATCTGTGTGGCTATAAAGACGCTGAAGGCGGGGTTTACGGAGCAGCAGAGGCTGGACTTCCTGAGTGAGGCAAGTGTGATTGGCCAGTTTGACCATCCCAACATCATTCACCTGGAGGGCGTCGTCACTAAATGCAAACCAGTTATGATTATCACTGAATACATGGAGAACGGCTCACTGGACATGTTTCTCAGAAAGAACGATGGCCGCTTCACCGTCATTCAGCTGGTGGGCATCCTGAGAGGAATCGCCTCCGGTATGAAATATCTCTCCGACATGAGTTATGTCCACAGGGATCTGGCAGCGCGAAACATACTAGTGAACAGCAACCTGGTGTGCAAAGTCTCTGATTTTGGCATGTCCAGAGTGCTTGAAGACGAACCAGAAGGAGCCTATACCACCAGGGGAGGGAAGATTCCAATTCGCTGGACGGCTCCAGAAGCCATCACATACAGAAAATTCACCTCAGCTAGTGATGTGTGGAGTTACGGCATCGTCATGTGGGAAGTGATGTCATACGGTGAAAGACCATACTGGGATATGAGCAACCAGGATGTGATCAAGGCAATAGAGGAAGGCTACCGGTTGCCGCCGCCCATGGAGTGTCCGCTGGCTCTGCATCAGCTCATGCTGGAGTGCTGGATGAGGGAACGCGCCGACAGGCCCAAATTCAGCCAGATCGTCAACATGCTGGACAAACTCATACGCAATCCTGCCACGCTCAAGAGGACGGCAGGAGACGCCAGCAGGTCACACCCCTCAACAATTAACCACGCCCCCTCAGAATGCTCCGCCCCTTCTTTGGCTTCAGTGGACGATTGGCTGAAACTCATTGGACTAGAGCAATACAGAGAAAACTTCAACACCGCAGGCTACAGCAGCATAGAGAGCGTAATACCCATGAATCACGAAGATCTGGCCAAAATGGGAATCTCATGCAGCGCACATCAGAGGAAGATCCTGAGCAGCGTGGAGGATTTATTATCTGGAATGCATCACAGGCAAGACTCTAAAGTTCCTGTCTGATCTGTGacgaggagaaaaaaaaaacgatgcaTCATGTTGGTCGACATGAATTACAAGAGGGACGGAGTATTTCACATCACTCTTGCACTTTAATGGAATATGAAAGGTATGGAGATCATAATGAATGAGCTAAACTGCACTTTTCTGGAGCGCTTTGTGCTTTATGGGGAGTTTTTTTATCTTCTCTGGGTGTCTGAGGATTTTGACGCTGGCCTTTTGCCGACAATTAAAATGACTCAATAGGATGGGATGAGATGTCTCTGACCCAAGCGGCGAGGCAGTGTTTTTTCGATGGGAGAAAGTTTGGGAAGTGCCCTTCCTTCTGTAagtagaaaaaaaagtcaaacgtTTAAAAAGCAAGGGCAAAAATGAACCACAATGCTTTTCTCCTCAGGATTTTTTTTCCCCAGGATGGCCGCTTGTCATCAGCAGGAAGGAATTGCTCCCCGTGGATCAGATCTGAACGTTAAATTCAAACAGATCTTTTGCCTCGGGAGATTTTCAGCCTTCGCAAACTAAACTAAAAGACCTTTCGGTGTGCTTGTTTTATGAAGGCCAGATGGAGCTTTCAGAGGCATTGCTGAATGGAAAATCATATTGCTTTATTtgttggggagaaaaaaaaaggagtAATGAAATAAAGGGAGTGAGGAGATAGATCCAGATAAGATTTAGTCTTAAGTTACTCATGTTCTGTGTGTTCAGtctttgcatttttaaagtaGCAAAGTTAATGACTTAATCAGACGGCTCTTCCTTGTTTctttctgtcttgtttttattCCCTCAGTTTGATTTCATTTACAGCACCTCCTTGTCAAAATGTACTATGAATACTGTTGATTCTATctacgctacctgacaaaagtcttgtcgtcgatcccagttataagagcaacgaataataataacttgattctagttgatcatttggaaaagtggtagaaggtagattttttttaggTGAAAAACTTCATCCCAatgatcacaaatactgcaaaagacctactggaacccgcatgggcccaagattctcacagaaatcagtcaagtttggtgaaggaaaaatcatagtttggggtaacattcagtagggggcatgcgagagatctgcagagtgtatgGCAACATCAAGGTACACAGGTACACAGGAGTGTATGGCAAcatctgaggtatcaagacatttcattacaaaccacaagagagggcaaattcttcagcaggatagcgctccttctcgtTCATCAGCCTcctcatcaaagttcctgaaagcaaagaaggtcaaggtgctccaggattggccagcccaatcaccataTGTGAACATAATTGAGCAAGTCTGGGTTAAAATGAAGGCTtcgaagatgaatccaaaggatcttgatgaactctgggagtcctgcaagaacactgtctttgccattccagatcacttaatttctattttttattatttatttttgtgtacacCACAACACAATATCAATAATTCACACTTTTTTATAATAACTAAGGGTAAACAAGAGCATTCAAAAACAGTCCCCCATAATGCCCCCAAGAAAAATCCAAATGAAAAACGCACACAGCAACATTAGCAACAACATGAATTTTCAaagcaactaaataaatatacataaaatataaaaaactcaaTCACAGATTAATAAAAAGGGCAGAgatcttgaatttttttttattaaataaaaaataataaatcagagGTGTGTTGTATTCTTGACAAAATTAATTAGAGGAGTctagttgttattttttttttttttcagtggaaccTCTTAATGGAAACCTATGTTTTTCAATATATAGAAAATACGTTAAACCTTCTAACCATAAAACCATGAAGACGTCCAGTGTAATAAAGTCTGTCTCCGGGTTATCAGTAACGCAAAGGCTAGAACATTAGCATTCTTATTttcagatgacttcattaataagtgatttaagtcattgcagagatgtatggatgcagtcctccaacctcatggagtcagacacaatattcactctgttcactgcagcatgacaagaCTAAGTAACAAGACTACTGTCTATGCaaggtcagaccttactgtcctaattaaatcattaaaaatcaaggcatgatcatattttattttgatcaaataagcgtaatctacagGACTTTGCCTAGctcataagccacttctgataccaaatgatcaactagaagtcaagttattatttgttgtttctaaacttagataggcgacaagacttttgtcaggtagtggtCACAAAATTAAATCTGTGTAATTTGATAAAGAGTTTGGAACTGCTGAATTAATCGaatcattatatttttaaaacctCTTTTCACTGTACATAATCTAGGCTTTTGTATGTACATAagatagttattattatttgcttgtcTTCTTGATGTACATAATACCATCAGTCGTTTCCATGTAcagtttcctttattttcttctttttttatttacatgtgcAAGAAGATGTTAATGGAATGTATGTAATAAGTGAGCATAATATTCATCATGGCAGCGCTTTTAACATTGTAAAACAGCAGTGGCTTGGTAACAGGTTGAAGAGTCTTTTAATTTCTGTATTTCCATCTTTAGGTGCACCTAACTTATGAGCTTTATTTATGATCTTTTGTATCTAGTTcttcaaataaaatgtcaaataaattatttgtagtCGGAGTTATATATTGTCAGGTATGAatatgagaatcagcacctccaagtccaaggTCATGGTTCTCCACTGGAAATAGATGATTTGCCAtatccaggttggaggaaagtcatTAACCCagatggaggagttcaagtatctcagggttttgttcacgagtgagggaaggatggaatgtgagattgacaggcggattggtgcagcagcagcagcattaaTGTGGTtgatgtaccggtctgttgtggaAAAGAAGGAGCTAaaccgaaaggcaaagctcttgatttaccggtcaatctatggtcctactctcacctatggtcatgagctttgggtcatgactgaaaggacaagatctcagacacaagcagctgaaatgagtttccttcacagggtggcagagCGCACGCTTATAGacggtgaggagctctgacacccaggaggagctcggagtagagccgctgctcctccacatcgagagaagtcagctgaggtggctgtggctgtttcggatgcctcctggacgcctatcTAGGGATGTGTTCCTTGCATGTCCCACCAGGTGggggccttggggaagacccaggacaagctggagggactatgtctcttggctggcctgttAGCACCTCCGGATCCCCAAGATGAACTGAAGGAAgcgtctggggagagggaagtctggagttctctacTAAGACTACTGCCctcgcgacccggccccggataagcggatgaaaatgacatAAACATTCGCTCTAAGTTAGTTTAATGACTTTCATGATCATGTTCTTGCATTCAGATAGCAAATATGGAATATTAGAACACTAATTTTTATAAGAAAGGGGAGGTAAAGCAAGGCAAGTTACATAAATACACAATGGTAAttagaaaaatgctgggttcatgTTGTCCATACACCAACtagaaattatttacatttattcatttagcagacagtctaaagtgacttacaaatgaggacacattcagcaattcaacaagaagaggcaatacaaacAAAAAGTGCTAATTACACAAACAAACTGTTAGTgttcagagaattaagtgctagaatAAGAGAAGGGAATGTATTTTTTAGAGAGAAGACTGTTTCTACAGGTGATTTGTCAAACTCATTCATCTGTGTGAGGCACATTCAtggtgtgttcacaccagatgcgaatTAGGCCTCAAGCGTGAGTGacttacatgttaagtcaacgcaaagacgtgaatagacatcctacGCGTGAATGAGGTGGCACGAATAACGCAAGTAGAGCATTTTGTGTGTTTGACATTGACACTGCAAATTGCTCTAGTTGGAAGCTAGCTCTTGTAGGGGAATGATTATGatgtagcacctgttgttggcaGTGTTGCCAGACATGCGATAATATTCGTATTTGTGGATAGATTCGACACTACAATGTACGATCAATACTGAAAAAAATTCTATAATGTTTGATAGTTTCAGGattttttagcatttaaagagAATTTCATTGTAATCTTAGGGCTTCTATACTAATTGGTCTCGCTGCATCTTTTCTCTACTGTCTGTAGAATATGAAGTTAGACACGTTTTCTATCTCATCTTATGTTACATTTTCTCAGCCAATCAACATGGAGAATGGCTCAAGTAGGGCTGAAAAGGAAGGTGAGAAGGACAGTGGAGTTTGTCCTTGATGTTCTCGTTTTTCCCTATTTAAATGCATCTTATGAACGTGTTTTTCCAAAGTAAATCTCTTCAAAACAAAGCCACAAAACCAGCTCATTACAGATACTCTGAATGTGCTCGTGCACACCTCAGAGTGTGTTAAAAATTCGGAAGGATGCACTGCCTACAAACCAACCAGTACTATGTTGTGGACCATGACGGCATCCAATTTGTAATGCAAAATGAATCCCTAAACATCTGGCAACACATACAGGTATCCAATAGCAGCGACATTGAGGTGGAGTTTAAACCTTCCCACTAAGGTAtgcctattttttttctttctcttgccgacaccagacaacagcttatcaaactgggcttggctcagtctgaagcaccgctgaaagcctccatcattctggtatagtttctggagcagctgatgaactcacagagctggtgcACCTCAGAAATGAGGATCCAGTTCACTCAGACATGACGCCGAACGagtctacgctgtttttcagatTTCCTAAAGCACTTACAAGACAGCTACTCAACAAAAACCATGTTTGCTATTTAGCAATGAACATTCACAGGGAAGACAGAAGCTTTGCCCATGACGTAAATCCATGTATACTGTGAGGTGAATTTGAcacacgaatgaagcgagtaaactcaaaacgTTCACACGTCCAGTTACACTCGAATGGCATCTAGTGTGTACAGCATCAGAATTGCATAATTATTTGAGGttgatttgtacattttttttttctgtgtaattttagtttgtaactgtctgactgtctttttaggaaggccagtgagaagtccattacagtaatccaccctgctggtgataaaagcatgaacaagtttctcaatgtaaacaaagcatctaattctttcatgtttttgagatgatagcatGCTGATTTGCCTACtgttttgacatgactactgaaacttaGATCTAAGGAGTTGTAAGGAGTTGTGTTACACAAAATATAACGTATATAAATCTGTCAAATTATTCTCCAGATCGAGCTCTTTCAGGTGGGATGAATTTGATTCCAGCACTTTAGTCAGTTGCGCCACACCTTCATGTGTAAC

Function

symbol description
epha4l Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in generation of neurons; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within cell adhesion and protein phosphorylation. Predicted to be located in early endosome and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in liver. Orthologous to human EPHA4 (EPH receptor A4).

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007411 axon guidance biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0005003 ephrin receptor activity molecular_function
GO:0005005 transmembrane-ephrin receptor activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-61 Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in generation of neurons; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within cell adhesion and protein phosphorylation. Predicted to be located in early endosome and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in liver. Orthologous to human EPHA4 (EPH receptor A4).

Ensembl:

ensembl_id ENSDARG00000010767

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018653 True 8510 mRNA 0.44 17 41945310 42039192

Neighbor

gene id symbol gene type direction distance location
XLOC_009491 slc25a36b coding downstream 137939 41767675 ~ 41807371 (-)
XLOC_009490 ftr91 coding downstream 182745 41757442 ~ 41762565 (-)
XLOC_009489 ftr72 coding downstream 188803 41752335 ~ 41756507 (-)
XLOC_009488 ftr73 coding downstream 195946 41746720 ~ 41749364 (-)
XLOC_009486 ftr90 coding downstream 200462 41711727 ~ 41744848 (-)
XLOC_009493 si:dkey-96g2.1 coding upstream 3910 42043102 ~ 42048022 (-)
XLOC_009494 NA coding upstream 14647 42053839 ~ 42058846 (-)
XLOC_009495 CR925728.2 coding upstream 24991 42064183 ~ 42066345 (-)
XLOC_009496 CR925728.1 coding upstream 41202 42080394 ~ 42086212 (-)
XLOC_009497 NA coding upstream 66250 42105442 ~ 42106950 (-)
XLOC_009483 NA non-coding downstream 277955 41640441 ~ 41667355 (-)
XLOC_009482 CR925731.1 non-coding downstream 401870 41529260 ~ 41543440 (-)
XLOC_009478 CR854897.2 non-coding downstream 549237 41393401 ~ 41396073 (-)
XLOC_009474 NA non-coding downstream 699301 41238245 ~ 41246009 (-)
XLOC_009472 NA non-coding downstream 873113 41068774 ~ 41072197 (-)
XLOC_009498 LO018107.1 non-coding upstream 96895 42136087 ~ 42139836 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location