XLOC_009494


Basic Information

Item Value
gene id XLOC_009494
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42053839 ~ 42058846 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018843
AGAAGTTCACTTTGTTTCTGAATGGACTCCTGCTGCTCTTTCTGCTTCCCAACTGGACAGAAAGTGTTGAAGAAGAAGGAATGAAAGATGAAAGTGCTGAAGAAGAAAGTGTTAAAGGACAAAGTGTTAAATCCGTGGACATCAACACTCTCGCTCGCATTATCAACTTCTTTGAGCAGAACTATAAGAGGGTGGATCCAGATGGCCATGTCCGTCAGTATGCTACAGCCATCAATGTACCAGTGGAACAGTGTCAACCAGACTTCGATCTTGACCAGAACAACTTTCTGACTCAGGAGACACCAGCAATTGTTAAAAACAATATTACTGATGAAACAAATGCACTTTACCAGGGTGCAGAGCTCATCGCCGCAGGAACTAGGAAAGTTGTGATCACTAAAAATAAGCAATACAACAGGCATTCAGAGTCTCTCCTGCTCAATCCTGTGGGGAACTCTCCAATGACCAAACTTCTGAATAAAAGAAAAGATGGCTGCTCGGTTTTCTACACGTTTGAGTCCCCGTGTGTGGACACATGTCTGAATCCAGATAGCAAACACAATATTCTAGGGGGCCTGATGAAGTGGAAGGAACATGGTGGGATTAAAGCTTTTGTTTTCAAGAATTTCTGGAAGTTTGACACTGGAAAAGATCTTCAGAGTGAGTTCAGAAAGATTGCAGCTATTGTTCCTCTGTACCGCTGCGAGAGTGCGAATGAGTGCATTGCTTGTAAAGGGGAAGGAGACACTGCCATTGACTCACGCTGTCTGCcttcaaatatgaaaaaaaatgaacTGTAAAGGTTTTTGTACACTGAAGCCTGAAATGTAGCTTTTCTTTTTGTATAAATATCtgaggattttcattttaggggggctcagctcctcattttttttctcctaaaaaaattcacacacacacacacacgcagcctaatattacatttataagtagtaatttaatagtaatactcttcaaaatgtttgtatgtttgtttaatatgggttgcatacactctcagaaaaaaaggtacaaaattgtac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018843 True 1043 lncRNA 0.40 2 42053839 42058846

Neighbor

gene id symbol gene type direction distance location
XLOC_009493 si:dkey-96g2.1 coding downstream 5817 42043102 ~ 42048022 (-)
XLOC_009492 epha4l coding downstream 14647 41945310 ~ 42039192 (-)
XLOC_009491 slc25a36b coding downstream 246468 41767675 ~ 41807371 (-)
XLOC_009490 ftr91 coding downstream 291274 41757442 ~ 41762565 (-)
XLOC_009489 ftr72 coding downstream 297332 41752335 ~ 41756507 (-)
XLOC_009495 CR925728.2 coding upstream 5337 42064183 ~ 42066345 (-)
XLOC_009496 CR925728.1 coding upstream 21548 42080394 ~ 42086212 (-)
XLOC_009497 NA coding upstream 46596 42105442 ~ 42106950 (-)
XLOC_009498 LO018107.1 coding upstream 77241 42136087 ~ 42139836 (-)
XLOC_009499 NA coding upstream 90130 42148976 ~ 42149580 (-)
XLOC_009483 NA non-coding downstream 386484 41640441 ~ 41667355 (-)
XLOC_009482 CR925731.1 non-coding downstream 510399 41529260 ~ 41543440 (-)
XLOC_009478 CR854897.2 non-coding downstream 657766 41393401 ~ 41396073 (-)
XLOC_009474 NA non-coding downstream 807830 41238245 ~ 41246009 (-)
XLOC_009472 NA non-coding downstream 981642 41068774 ~ 41072197 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000245_00002575_00011311 NA coding CI01000245 null 1984 ~ 11400 (+)