CI01000048_00659494_00667971


Basic Information

Item Value
gene id CI01000048_00659494_00667971
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 659022 ~ 670072 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000048_00659494_00667971.mRNA
CTATAAAGATTGTGTATGCACATTTAGGAGTGAACTGTCTCTGAAGAAGCATTTAACTTGCGACCATAGTCAGTGTGTTCAAGCCTCCTCAAAATTTCTTAAAGCAACATCAAATGTGAGCTGTGACCTGTGTAATTTCTCAGAGGCTTGCAGTGTTTCACAGTATTTTGCACATCTTAAAACACACATTAAAAAGAAAGAGTCAGTGAGGTGCCCCTTTCAAGACTGTAGTTTCCAGACCAGTGTGTACAGCACTTTTCGTGCTCATAAAAGTAGGAAACATCACCACAGCACTTTGAAAGATTTTCAAACAGACTTGTATCAAACTTGCATTCCTGGTGATTCAAACCCTGAAAGTGCAGACTCTGAAATTCATTCATTCACCCTGGATTGCTCAACAGTAGATAGTGACATAGATGTCCAAGACCTACAGGATTTGATTAAACACAAAGTAGCATCACTGTTACTTCGCATGCAAACAACTCTACATGTCTCAAAAGCCACCGCACAGGAAATTGTAAATGAGCTTTGCAGTGTTTATTCAATTGTGCAAGAGTTCACTCCAAGAATAATTGAAAGTGTATTGGTTAAGCACAATTGTGTATTAACCCATGAAGTGACTGCTGCCTTAGCTGAGATAGTCGAAAAAACAAATCCCCTAACTTCCCTTTCAAAGAGTGGCCCTTTTGCAACCGAATACAAAAGAACCACTTATTACAAGGACAACTTCAAAGTAATTGAGCCAGTTGAATATTTTTTAGAATCGTCCTCCCAAAAAAAGTTTTTTTATATTCCAATTTTGAAAGTTTTGACAGAATTGTTAAACCATGATGACATTTTGGATAAAATCCTGCAGGAAACTGCTGACCAGTCCGGTCAGATTAAAACATACAGAGATGGACTGTACTGCAAAGGGAATCCTTTGCTCTCCTCAAAGAGTTTAAGCATTGCACTTGGGATGTATATAGATGACTATGAGCCACTGATTAGGGACATTCAAGTCCTTGAAGAGGAAGGATTGTATGTTCAAAAATTGGGAACAAGTGTCAAGGGTTCTGTGTTATATGTGTCAGCGGACAACTTGGGGGCCCACTCACTAGCTGGCTTCCAAGAAAGTTTCAATGTTGATAAATTCTGCAGATTTTGCCTAGCTAGTCGCAAGGATATTAACTTGCATGAAGTCAGAGAGGGGGTGTTTCCACTCAGGACGATTGAAACTCACAAACAGACCCTTGAGGAATTGAAGATGAATTCACTGGTTTCCCTGGATGGAGTAAAGAGAGACTGTATTCTTGATAAACTTAATTATTTCCAGACAGTTCAAGGGTTTCCTCCAGATTTTATGCATGACCTGTTTGAAAGTATAGTACCAACAGAGTTAAGTCTTTGCATAAAGTCCCTTATTTCCAAAAGGTACTTCACATTAGATGACCTCAATGACGTCATCAAGTCTTTTCCTTTCAAGTTTACTGATAAAACTAACAAACCACAACAAATTTCAAAGACATTTGTGTCAAAACATTCAATTGGTGGAAACTGCCATGAAAACTGGACTCTGTTAAGGCTACTGCCATTGATGATGGGTCACAGAGTACCAGGAGACACAACTTGGCAAATCATACTAGATCTGAAAGATATTGTTGAGCTCCTAGCTACTGGACAATTTTCTGATGAGACACTGTGCTACTGGGAGTCCAAAATCTCAGAGCACAGGTGCTTGCTGAAAGAGTGTTTCCCAGATTTCCACATTCTCCCCAAGCATCACTTTTTAGAACATTATCCTGAAATGATTAGTCGATTTGGGCCTCTGACTGATTTTTGGATTATTCGCTTTGAGGCGAAACACAACTTCTTTAAGAGAGTTGTACATGACGATGTTGATCACATGACTGCAGCAGAGTTAAGACAGCTGGCAATGCGAGCCTGGGAGAGTGAGAAGTTACACACAGACAAGAAGGACAGGGACCCAGGCACGCATGTGTTTGAACTCCGACATGACAGGGAGCCTCCTCTTGAACTAGAAGGTTCAGAGCTTCCCCAAAGTGGACCAGCTCGTCCTAGTCGCCCCTCGCAGCCAAAGTCTGGCGTATTAACATGTGACGCACTGCTAGACACTGGCTCAGAAATTTCTTTGGTGTCACCTGGGTTGTTTAAAAAACTCACCCAGGTAACCAACTCACTCGGTAAGTGGCTCAAGATTGAGAGCTGTCAGATCAAGATAACTAGCTACACACAGGATCAGGCCCCGATTAACCAGCGGGTGTGGGTGCAGTTAACCTTTGGTGAGATGAAGATAATTCACCCTCTCTATGTTGTTGGTTTTGACACAGAACAACTTCTTATTGGCCAGGATTTGTTGAATAGGCTCACACCATTAATTGACTATCACAGCTATCAATTGTGGGCACAAGCTAGAATCCCACGACCCATTGAGGAGACTAGTTCTGGTCAGAAGCTATGCAAGGCAATGGAGGTAGAGAGGACATGTGACTCTAGACAGCTGACAGTGAAGGATGCCCACCTTAATGAAGAGGCACCCGCTGTGAAGGAAATGCAAATCATCAGCCCCCAGTCAGCAGACATGGCTCATGAGAACAAGATCCCCCTAGAGCTGTTAGAGAAGAAACATGCATTTCTGTGTGCCCTGGAACCTCTTAACACCCAGGTGTATAATCCGCAGGTGGTGGGGGGCATACATGTTAATGAAGTACTTGTTGAGGATGCTGTGGTTGCACTCTGGTCCCCGGACCTTTTCTCAATGGGCGCCTTGTACAAGGTCCTCCAGCTACCTTTAGAGGAAACTCCTGATCCAAAATCCTCTTGCCATTTAGATTCTTTTAGTCCCTCTAAAGAGTTCATATGTAAAACTTTGACACAGGTGACATACAGTGCTTTTTTCCCGGTTTCACTGAAAAATTCTAGTTCAGAAGTCCTGAAGCGAACCAACCTCACACCAAGCCCAGCAGCCAGCACCTCAGCAGACATCCATCCACCTGTTGTCATTAAATGTCCAATCTTTGTAATTCCAGCATTCCTTAAAGCAGTCCTCATTGATGCTGACTTCAAAATTTCTACATCCACAATAGGATTGTGCAATAGGGGTTCTTCTCTCATCCACAAACCTTTCACATCCTTAAGATTCCTTGACGTTCTTAGAATTTTCCAGGCTTTCAACATGGACTGATAGAAATGTGTCAATGCAGACAAATCAACTCCATAAGAAAAATCCCATACTTCCTCCTTTTCTTAGGAGGGCACAAGCTATTCCAGCCCAGCTCACACCTTTTCCATAAAGTAATCTTTTTGCTGTCTGAAGTCTAAAAGTCTTTATTCTACTTTTAATGTCCACCAATCCTTGGCCTCCTTCTTGTCTAGGTAGATATAACACAGGTGCTCTTAGCCAATGCTGTCCAGACCAAAAAAAAGTCACTAGAAGTTTTTGAATACTTTCCACCAATTCCTCAGGGGGTTCTAAGACAGTCATTTTGTGCCATAAGGATGAGGCTACAAGGTTGTTGCAGACCAAAACTCTTCCCCTGTATGATAGCTGGGGGAGCAGCCAATGCCAGCGAGACAACCTAGCAGACACCTTTTCCATCAGGCCCTCCCAATTCTTTCTCTCATAATCCTCTCTTCCTAAAAATATCCCCAAGTACTTTAACCCAGACCTTCCCCACTGTAAGCTACCTGGAAGTGTTGGACTATTATAATCCAAACCACACCACAGGGCATCACTTTTATCCCAATTTACTTTGGCAGATGAAGCTTTCCCATAACTCTCTAAATTATCTGTTAAAACCTGAACATCATTTTCATTTCTTAAAACAACAGTGATATCATCAGCATATGCTGAGACTTTTATACAATCATAACAATTTAAGACATTTGTCTGTAATCCAGTTAGCTTTTCTCTTATTTTACAGAGAAGAGGTTCAATGACTAAACTATACAGTTGACCTGAGAGTGGGCATCCCTGTCTTATGCCCCTCTGTACTTTAACAGGAACACTCAGTCCACCCACCATTTTTATCATACATGTGGCATTATTGTACAACAATTTTATCATTGCAACAAATTTATCTCCAAAACCAAAACCTTTTAAAACTCTGAAAAGAAACTGGTGATCAACTCGATCAAATGCCTTTTCCTGGTCTAGTGATAAAATACCTATATCATCATTATTTTTCAAAGCATAATCAATAACATCACGTACTAAATGCAAATTATCAGTGATACATTATCTTTTATACAATAGGATTGATCTTTGTGTATAATTTTATGCAATATTTTGTTTAACCTGTTAGCCAAACACTTTGATATTAGTTTATATTCAGAACATAGAACTGCAACTGGTCTCCAATTCTTTGTTAAGGTAAGATCACCTTTCTTGGGAAGTAGTGTTAAAACTGCTCGTTGACAACTTTTAGGCATCAAACCAATACGAAAAACTTCTTGTAGTACTTCATAGAAATCAGCTCCAATTAAAGTCCAAAAGTGCTTGTAAAACGCGCCAGGAAGTCCATCTATACCTGGGGTGCGACCTGAAGCAAGTCCTAGTACTGCAGCGCTTAATTCCCCAAAGGAAAGTTCCGTATCCAAAATGTGTTTATCTTCAGCTGTTAAACAGGGAAGATTTTGCAAAAGTTCATTTTGGCTCCTCTCATCTGTGTTCTCAGCAGAATATAACTTAGA
>TU232177
GTAATATCAAACTTGCCAGCACAGTATAGGTCTTCAGTACAATCAATTTTTCTGGCTTGTCTGTGTAATAGCAATGATGTAAAGAATTATGGCTATGATGCCATTTTTCAGCCACTGATTAGGGACATTCAAGTCCTTGAAGAGGAAGGATTGTATGTTCAAAAATTGGGAACAAGTGTCAAGGGTTCTGTGTTATATGTGTCAGCGGACAACTTGGGGGCCCACTCACTAGCTGGC
>TU232180
GGAAACTGCCATGAAAACTGGACTCTGTTAAGGCTACTGCCATTGATGATGGGTCACAGAGTACCAGGAGACACAACTTGGCAAATCATACTAGATCTGAAAGATATTGTTGAGCTCCTAGCTACTGGACAATTTTCTGATGAGACACTGTGCTACTGGGAGTCCAAAATCTCAGAGCACAGGTGCTTGCTGAAAGAGTGTTTCCCAGATTTCCACATTCTCCCCAAGCATCACTTTTTAGAACATTATCCTGAAATGATTAGTCGATTTGGGCCTCTGACTGATTTTTGGATTATTCGCTTTGAGGCGAAACACAACTTCTTTAAGAGAGTTGTACATGACGGTAAAAACTTCAAGAATGTCTTGCTCACTCAGGTGTTGTGAACAACAGTTAAGATGGCATTCCAGGGACCAGTTTACGACAGGGCCCCTCTCTAACTGCTGGTGTGTAAGAAGATGTGCCACACTGTGATTGGATCTTTGGTGAATGAACATAAACAAATGTTCAGCAACATCAGATAAGATGTTAGGACAACTACCAGACACCTCTTCCAGAGCAGGAAGGGGAACCTTCTGCACCCACCAAAACCAAGGAGAGGACTTCTCATTGGACGACACATTGACTCTAACCACCAAACCCATTCCTAAGATTTAGGCAAGGACTGCCATATAAATTCCTTCAGGACCCCCTGGATGGAGCAGCAGTGACTGAAATAAAGAGAGGCCACAGAGATCTATCTAAATCCATTCATACCTATGTTTGGAGGCCTTAATTTGATTGAAACTGCATCACATCCACTCCGTCTTCACGCAAAGCACAGTTTATGTTAATGGTCACTGACTGTTAAAACAACAGGTCATGGGACAGACCTGTTAACAGATAAACAAATGCATGGACGATGATTTAATCATTTCATATTGTGTTTGGTGTCTATGTGTTCCCTACGATGCCTTTAATAATTTGAAAGAGGTTTGGTAAAGAAATAATGCATGGGTAAAATGTTAAAGACACTATTTTAACACTGTACTTTATGCTATGCAAATGAGTTCCACACTAGGGTGGGCAACACCGGGGTTGCTTCAGATAACAGTGGCCAATCACACTCCAGGATCGGCAAGGCGCCACATTTCAATCTCC
>TU232186
CTGAAGTCTAAAAGTCTTTATTCTACTTTTAATGTCCACCAATCCTTGGCCTCCTTCTTGTCTAGGTAGATATAACACAGGTGCTCTTAGCCAATGCTGTCCAGACCAAAAAAAAGTCACTAGAAGTTTTTGAATACTTTCCACCAATTCCTCAGGGGGTTCTAAGACAGTCATTTTGTGCCATAAGGATGAGGCTACAAGGTTGTTGCAGACCAAAACTCTTCCCCTGTATGATAGCTGGGGGAGCAGCCAATGCCAGCGAGACAACCTAGCAGACACCTTTTCCATCAGGCCCTC
>TU232187
CCTGTCTTATGCCCCTCTGTACTTTAACAGGAACACTCAGTCCACCCACCATTTTTATCATACATGTGGCATTATTGTACAACAATTTTATCATTGCAACAAATTTATCTCCAAAACCAAAACCTTTTAAAACTCTGAAAAGAAACTGGTGATCAACTCGATCAAATGCCTTTTCCTGGTCTAGTGATAAAATACCTATATCATCATTATTTTTCAAAGCATAATCAATAACATCACGTACTAAATGCAAATTATCAGTGATACATTATCTTTTATACAATAGGATTGATCTTTGTGTATAATTTTATGCAATATTTTGTTTAACCTGTTAGCCAAACACTTTGATATTAGTTTATATTCAGAACATAGAACTGCAACTGGTCTCCAATTCTTTGTTAAGGTAAGATCACCTTTCTTGGGAAGTAGTGTTAAAACTGCTCGTTGACAACTTTTAGGCATCAAACCAATACGAAAAACTTCTTGTAGTACTTCATAGAAATCAGCTCCAATTAAAGTCCAAAAGTGCTTGTAAAACGCGCCAGGAAGTCCATCTATACCTGGGGTGCGACCTGAAGCAAGTCCTAGTACTGCAGCGCTTAATTCCCCAAAGGAAAGTTCCGTATCCAAAATGTGTTTATCTTCAGCTGTTAAACAGGGAAGATTTTGCAAAAGTTCATTTTGGCTCCTCTCATCTGTGTTCTCAGCAGAATATAACTTAGAATAAAAGTCCACTGCCTTCGCATCTTCGCATTTCTACAGGATTGCTTGTATTGCGACCATGACTGTTTTTCAAACTATACATTTTTCTTTCTTGTACACTTTTATGTTCCAAGTTTAAAAAAAAAAAAAAAAGTAGGACCATCCATATCTTTCATTGATAAAAACCTGCTCCTCACAAGAGCACCTTTCACTCTCTCATTTAGAATAGAACTCAACTTTAATTTCTTATCAGACCACTCTTGTATATTAGCAGTAGGATCTCTCATCATTTTTTCTTCAATGACTAAAATTTCTTTCTCAATCCACTCCAAAGTCCGTTTCAAACTCAAAGTTGAATAAGATGTATATTGTTGACAAAATTCCCTTATATGTGCTTTACCAATTTCCCACCAAAGAATTACATTCTCATATCTGCTTTTTTCACTTTTCCAAGTTTCCCAAAAATACTTAAAAGATTCACAAAAACTTTTGTCTTGCAGTAACTTGACATTAAAATGCCAATAGGAACTCTTATTTCTTCTAGATATCAATGTGCAGTCAACCGTAATAAGCTTGTGATCAGTAAAATGAGCGGGGACAATATCTGTATGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000048_00659494_00667971.mRNA False 4692 mRNA 0.41 6 659022 669479
TU232177 False 237 lncRNA 0.41 1 660056 660292
TU232180 False 1138 TUCP 0.43 1 660719 661856
TU232186 False 297 lncRNA 0.45 1 668098 668394
TU232187 True 1313 lncRNA 0.34 1 668760 670072

Neighbor

gene id symbol gene type direction distance location
CI01000048_00567988_00568484 NA coding upstream 89970 567988 ~ 569052 (+)
CI01000048_00425103_00519682 NA coding upstream 139132 425103 ~ 519890 (+)
CI01000048_00403297_00404487 NA coding upstream 254408 403232 ~ 404614 (+)
CI01000048_00261577_00264226 NA coding upstream 393480 261400 ~ 265542 (+)
CI01000048_00149401_00154452 NA coding upstream 504570 149401 ~ 154452 (+)
CI01000048_00693752_00694265 NA coding downstream 23593 693072 ~ 694474 (+)
CI01000048_00705234_00707566 NA coding downstream 35382 704861 ~ 707608 (+)
CI01000048_00713811_00714700 NA coding downstream 44000 713479 ~ 714947 (+)
CI01000048_00809677_00812096 NA coding downstream 140198 809677 ~ 813160 (+)
CI01000048_01003499_01009234 NA coding downstream 333269 1002748 ~ 1010512 (+)
G204559 NA non-coding upstream 11 658780 ~ 659011 (+)
G204558 NA non-coding upstream 639 658168 ~ 658383 (+)
G204557 NA non-coding upstream 1093 657664 ~ 657929 (+)
G204556 NA non-coding upstream 1364 657391 ~ 657658 (+)
G204555 NA non-coding upstream 1799 656496 ~ 657223 (+)
G204565 NA non-coding downstream 708 670187 ~ 670423 (+)
G204566 NA non-coding downstream 979 670458 ~ 670677 (+)
G204567 NA non-coding downstream 1200 670679 ~ 677452 (+)
G204568 NA non-coding downstream 12880 682359 ~ 683334 (+)
G204569 NA non-coding downstream 14215 683694 ~ 683957 (+)
G204472 NA other upstream 297361 361025 ~ 361661 (+)
G204409 NA other upstream 373275 285270 ~ 285747 (+)
G204233 NA other upstream 595425 63188 ~ 63597 (+)
G204824 NA other downstream 323976 993455 ~ 993969 (+)
CI01000048_01214358_01215546 NA other downstream 544893 1214358 ~ 1215807 (+)
G205026 NA other downstream 713476 1382955 ~ 1383698 (+)

Expression


Co-expression Network