XLOC_009502 (farsb)


Basic Information

Item Value
gene id XLOC_009502
gene name farsb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42264891 ~ 42283830 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018659
GCGTTCCTCCGGTTCAGACTCCGGTGATCTGCTGCGACCATGCCGACAGTCAGCGTGAAAAGAGATCTGCTTTTTGAAGCTCTGGGACAAACATACACTGATGaagagtttgatgaactgtgtTTCGAGTTTGGCCTCGAGCTGGACGAAATCACCTCGGAGAAGGACATTATAAGCCGTGAGCAGGGAGATGATAAAGCAGAAGGAGCGTCTGATGTTGTGCTCTATAAGATCGACGTTCCAGCAAACCGCTATGATCTGCTGTGTCTGGAGGGTCTCGTTAGGGGTCTGCAGGTCTTCAAGGACAAGATGGAAGCTCCTCGGTACAAGCGTGTGAGTCCTGCGGATGGAGGAGAGCCTCAGCGGCTGCTCATAACAGAGGAGACGGCATCTGTGAGGCCGTTCGCTGTAGCCGCTGTACTGCGCAACATTACATTCACCCAGGAGCGATACGACAGCTTCATAGAGCTGCAGGAGAAACTGCACCAGAACATCTGCAGGAAAAGGACGCTGGTTGCAATAGGAACTCATGATTTGGACACGATCTCCGGTCCGTTCACCTACACAGCCAAAGCACCCGGTGAAATCCGCTTCAAACCACTCAATCAGAGCCAAGAGTTCACTGCCACTGAGCTCATGAGTCTCTATAAGTCCGACAGTCACCTGAGGCACTACCTGCACATCATCGAGAACGAGCCTCTCTACCCGATTATATATGACAGTAATGGCATCGTCCTGTCCATGCCTCCTATCATCAATGGGAACCACAGCAAAATCTCATTAAACACAAAGAATGTTTTCATTGAGTGCACGGCCACAGACCTCACAAAGgcaaAGATCACGCTGGACATGATAGTGACCATGTTTAGTGAATACTGTGAGCAGCCCTTCACGGTTGAGGAGGCAGAGGTTGTTTATCCTGATGGCAGAATGTGTGTGTATCCTGAGCTGGCGTACAGGACGGAGACTCTGTCTGGGGAGTTCATCAACAAAAAAGTTGGCATCAATGAATCTGCAGAAAGCATCGCTCAGCTGCTGACCCGCATGTGTCTGAGGTCGGAGGTCAGCGGTGAGGACGGTCAGATCCAGGTGGAGATCCCGCCCACTCGCTCTGATGTCATCCATGCCTGTGACATCATGGAGGACGCGGCCATCGCGTACGGCTTCAACAACATCGTCAGGAGCACGCCTCGCACTTACACCGTAGCCAATCAGCTCCCTGTAAATAAACTGACAGAATTATTGAGGCAAGATCTTGCAGCTGCTGGCTTTACTGAAGCTCTAACATTCGCTCTGTGCTCACAAGAAGACATTGCTGATAAACTCAGGAAAAACATGGCAGAAATCGGAGCAGTTCATATCTCCAACCCGAAGACCGCAGAGTTTCAGGTGGCACGTACCTGTCTTCTTCCTGGGCTGCTGAAAACAGTCGCTGCCAACAGAAAGATGCCACTTCCTCTCAAACTGTTCGAGATTTCGGACGTCGTCCTGAAGGATGAAACAAAAGATGTAGGAGCTCGTAACAACCGGCGTCTCTGTGCCATTTACTACAACAAGAGTCCAGGTTTCGAGGTCATCCATGGGCTTCTGGATCGGGTCATGCAGCTGCTGGATGTCAAACCGGGCCGTGATCAAGGATACCACATACAGGCGGCAGAAGATTCAACCTTCTTCCCTGGTCGCTGTGCTGAGATCTTTTCATCAGGCAAGAGCATCGGGCACCTCGGGGTCCTCCACCCTGACGTCATCAGTCGCTTTGAGCTCACGATGCCCTGCTCCGCTATAGAAATCGATATTGAGCCCTTCCTGTGAGGTCATTATGCAGAGTATTTTAGCCACACCCCTATCCATTAGCCCCTTCTCCTACATAAACAGTACCGCCCCCTTCTGTCTTCAGGAAACGAGCTCTAGTTACAACAGCATGTGTTACTGTATGCCCAGAAGATAAATCACTGTTTTACTCCATATTAAACATCAAGACTGAGTCGTTGTGTCCACTTCATTTAATgacaaggaaataaataaatgaatatggatGAGTAAACCCACAAA
>TCONS_00018660
AGACTCCGGTGATCTGCTGCGACCATGCCGACAGTCAGCGTGAAAAGAGATCTGCTTTTTGAAGCTCTGGGACAAACATACAAGATTATGTCAACATCCGCTGAAATCATGGAGGAATTTCTTAACGAAATAAATTACACTTTCTGATGaagagtttgatgaactgtgtTTCGAGTTTGGCCTCGAGCTGGACGAAATCACCTCGGAGAAGGACATTATAAGCCGTGAGCAGGGAGATGATAAAGCAGAAGGAGCGTCTGATGTTGTGCTCTATAAGATCGACGTTCCAGCAAACCGCTATGATCTGCTGTGTCTGGAGGGTCTCGTTAGGGGTCTGCAGGTCTTCAAGGACAAGATGGAAGCTCCTCGGTACAAGCGTGTGAGTCCTGCGGATGGAGGAGAGCCTCAGCGGCTGCTCATAACAGAGGAGACGGCATCTGTGAGGCCGTTCGCTGTAGCCGCTGTACTGCGCAACATTACATTCACCCAGGAGCGATACGACAGCTTCATAGAGCTGCAGGAGAAACTGCACCAGAACATCTGCAGGAAAAGGACGCTGGTTGCAATAGGAACTCATGATTTGGACACGATCTCCGGTCCGTTCACCTACACAGCCAAAGCACCCGGTGAAATCCGCTTCAAACCACTCAATCAGAGCCAAGAGTTCACTGCCACTGAGCTCATGAGTCTCTATAAGTCCGACAGTCACCTGAGGCACTACCTGCACATCATCGAGAACGAGCCTCTCTACCCGATTATATATGACAGTAATGGCATCGTCCTGTCCATGCCTCCTATCATCAATGGGAACCACAGCAAAATCTCATTAAACACAAAGAATGTTTTCATTGAGTGCACGGCCACAGACCTCACAAAGgcaaAGATCACGCTGGACATGATAGTGACCATGTTTAGTGAATACTGTGAGCAGCCCTTCAC

Function

symbol description
farsb Predicted to enable several functions, including ATP binding activity; magnesium ion binding activity; and phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of phenylalanine-tRNA ligase complex. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; musculature system; and nervous system. Orthologous to human FARSB (phenylalanyl-tRNA synthetase subunit beta).

GO:

id name namespace
GO:0006432 phenylalanyl-tRNA aminoacylation biological_process
GO:0009328 phenylalanine-tRNA ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko00970 Aminoacyl-tRNA biosynthesis
ko01007 Amino acid related enzymes
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-021206-2 Predicted to enable several functions, including ATP binding activity; magnesium ion binding activity; and phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of phenylalanine-tRNA ligase complex. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; musculature system; and nervous system. Orthologous to human FARSB (phenylalanyl-tRNA synthetase subunit beta).

Ensembl:

ensembl_id ENSDARG00000016864

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018659 False 2052 mRNA 0.50 17 42264891 42283830
TCONS_00018660 True 939 processed_transcript 0.49 10 42277673 42283815

Neighbor

gene id symbol gene type direction distance location
XLOC_009501 NA coding downstream 39131 42219583 ~ 42225760 (-)
XLOC_009500 pax3b coding downstream 58001 42163356 ~ 42206890 (-)
XLOC_009499 NA coding downstream 115311 42148976 ~ 42149580 (-)
XLOC_009498 LO018107.1 coding downstream 125055 42136087 ~ 42139836 (-)
XLOC_009497 NA coding downstream 157941 42105442 ~ 42106950 (-)
XLOC_009503 FP340266.1 coding upstream 244960 42528790 ~ 42528904 (-)
XLOC_009504 NA coding upstream 267593 42551423 ~ 42557997 (-)
XLOC_009505 si:ch211-181d7.1 coding upstream 409625 42693455 ~ 42720384 (-)
XLOC_009506 si:ch211-181d7.1 coding upstream 439296 42723126 ~ 42736433 (-)
XLOC_009507 CR457441.1 coding upstream 444640 42728470 ~ 42728586 (-)
XLOC_009496 CR925728.1 non-coding downstream 178679 42080394 ~ 42086212 (-)
XLOC_009509 BX890602.1 non-coding upstream 790093 43073923 ~ 43119191 (-)
XLOC_009511 NA non-coding upstream 889312 43173142 ~ 43187543 (-)

Expression


Co-expression Network