XLOC_009505 (si:ch211-181d7.1)


Basic Information

Item Value
gene id XLOC_009505
gene name si:ch211-181d7.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 42693455 ~ 42720384 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018662
GGGCCATTTTGTGCCTGCACGTTCAACAGAAAGTTCGCGTATCAGGGACCATTTGTAAAAGATTCAACTGCATGTATGAACTCTGCCAGTTGCCTTAGTACACTTATTCTGATAAATTcgcagctggaaaaaaatcttaaatcttaagCGAGGAACATGGAAAAATCGCTACCGGCATGCAACCGTGTTCATTCCAAGAAAATAAGCATGgtcagctgtgtgtctatgaagagatAGCAGTCCATGGGTCCACTTCTGTGAGTTAATGATGGAAACACACCATCTAACTACACACACAGGATCACCAGCGTCCAGCTGTGTGTCTGTGAAGAGTCATCAGTCTATGGATCCACCGCTATGTTTTAATGATGGAAACACTACATCTGACTACAGGAACAGTTTAGTCCACTTCAAGAGAACAGGATCATCAGCTTCTAGCTGTGTGTCTGCGAAGAGTCATCAGTCTATGGATACACCACATTTTAATAATGGAAACACTACATCTGACTACAGATACAGTCCAGCACGCCTCAAGATAACAAGACCACCAGCTTCAAGCTGTGTGTCTGTGAAGAGTCATCAGTCTATGGATCCTCCGCTACGTTTTAATGATGGAAACACTAAATCTGACTACATACACAGTTTAATCCACTTCAAGAGAACAGGATCATCAGCTTCTAGCTGTGTGTCTGCAAAGAGTCATCAGTCTATGGATACACCACTACATTTTAATAATGGAAACACTACATCTGACTACAGATACAGcCAAGATATCCTTAACATATTTAGATCAAATCTAAAGAATAAGTTCCGGTGTCTGTATGAGGGAGCAACGGAACAAGGTAACCCAAGACTCCTGAATGAGATCTACACAGAGCTCTACATCACAGAGAGTGAGAGTGGAGAGATCAGTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGATCAACAACAGAGGACACAGCGATCAAATGCAGAGACATCTTTACACCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATTGGAAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGATCAATCTGATGAAGGACAAAACACTCAGTCTGTCAGATCTCCTGCATGTATTTTTCCCTGAAACAAAAGATATTGACATTTTTagtgacaaatataaaatattgttcatctttgatggtctggacgAGTGTCGTCTTCCTCTAAATTTCAAAAGCAATGAGATTCTACAACATGAGACCAAAACATCATCAGTGGACGTGCTGCTGACGAACCTGATTGTGGGGAATCTGCTTCCCTCTgccctcatctggatcacctccagaccagcagcagcagatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATgaccctcagaaggaggaatacttCAGCAAGAGAATCAGTGATCAGAGTCTGGCCAATACAATCATCTCACACCTGAAGTCCTCCAGGAGCCTctacatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTTCTGGAGAAGATGTTGAGTGAAGCAGAGACTGCAGAGATCCCCAAGACTCTCactcagatgtacacacacttcctGATGGCACAGATCAACACCAAAGACGTGAAGTATActggaaaaaaagacaaagacGTGATCTTCAAACTGGGGAAACTGGCGTATGAGCAGCTGGAAAGAggcaatgtgatcttctatgaggaAGACCTGAGAGAGTGTGGCATTGATGTGGCAGAAGCTTCAGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGGGAAAGTCTTCAGCTTTGTTCATCTGAGCGTTCAGGAACATTTAGCAGCTCTATATGTGCACCTCTTATTCACAAACCACAACAGAAATGTGTTTGAACCAATTACTAAACAAACTTTGCACTCCATGATCAGGAACTGGTTTAAACCCAAGCCATCAAAACAAGTTTCAATATCTGAGCTGCATCAGAGAGCTGTAGATGAAGCTCTACAGGGTAAAAATGGAGAACTGGACCTTTTCCTCCGGTTTCTTCTGGGTTTGTCAGTCGAAAATAATCAGATTCTCCTACAAGGGCTAACAAAACAGACAAGATGCTGCCCAGACAGCAAGGAAACAGCTGATTACATCAAGAAGAAGATCAGGACCACTCACTCTCCAGAgaaattcattaatttgttctaCAGTCTGAATGAACTGGGTGATCATTCACTAGTGAAGGAAGTAACGCACTATCTGAGATCTGGAACAATCAAAAAGTCCAGACTCTCTTCTTCCCATTGGTCAGCTGTAGCTTTTGTGCTTctgacctcagaggaggagctgaaTGAATTTGATTTCAAGACGTTTGTTGAAGGAAACAATAAAGCTGAAAATTTGCGCGTTTTTAAGAAACTTGTGCCGGTGATTAAAGAGGCCAGATTAGTTCAATTGAGTGATTGTGGAATCACAAGtgaaggttgtgctgctttggcttcagctctgaggtcaaacccctcacacctgagagaactCAATCTGTCTTGGAATAAACTGGGAGATTCGGGTGTGAGTCTTCTCTGTGCTGCTTTCAGGAAACCTCTCTGTAAATTGACGATATTGTGGTTGTGGGATTGTGGAATCACAAGTGAAGGTTGTGCGGCattggcttcagctctgagatccAACCCTGAACACCTGAGAGAACTGGTCCTGTCCTGGAATAAACTAGGAGATCTGGGTGTAAAGCTTTTCTGTGGTGCTCTTCAAGATCCTAATTGTAAGCTGGAGAAACTGTGgTTGAGAGATTGTGGTGTCACTGCTGAAGGTTGTGTTGCTTTGGCTGCCGCTCTGAAATCAAACCCTAATCACCTGAAACATCTCAGTTTGTCAGAGAATTGCCTTGGAGGTTCTGAAGTGCTAATACTTTCAGATCTGCAGGACAAATCACCGTATATACTAAAGGAGCTATATTATTGACTCTTGGTTTTTAGTTTGCTCTGGGTATGCTGATGGCGAATAAAAAGAGAGATGTCAGAGAAATTCAACCAACACACACTGAAGACATGGCACAGTGATAACGCTAATGTATTGCTTTGTAACTATGATCATGTGGCCTCTTTTTGCTGGTATTTCTATCATAATACTTGCATTCCTATTGATATTACTTTCTTATTATAATAAGAGTGGAATATATTTAAAACTCTGTTTATATTTATACAGGTCATGTACATTTTAGGCTCAGGATTATTGAGGGACTGTCTTTTCTCCTTTATACCAGCAGAGGGCGACAAAAACCTACCGTTTATTTTAGCATCGTTTTGTGCAGTTTAAAAATAATTGTGAAGAc
>TCONS_00018663
TTGTATCTTTGCTGTGACAGTTCATTCCAAGAAAATAAGCATGgtcagctgtgtgtctatgaagagatAGCAGTCCATGGGTCCACTTCTGTGAGTTAATGATGGAAACACACCATCTAACTACACACACAGGATCACCAGCGTCCAGCTGTGTGTCTGTGAAGAGTCATCAGTCTATGGATCCACCGCTATGTTTTAATGATGGAAACACTACATCTGACTACAGGAACAGTTTAGTCCACTTCAAGAGAACAGGATCATCAGCTTCTAGCTGTGTGTCTGCGAAGAGTCATCAGTCTATGGATACACCACATTTTAATAATGGAAACACTACATCTGACTACAGATACAGcCAAGATATCCTTAACATATTTAGATCAAATCTAAAGAATAAGTTCCGGTGTCTGTATGAGGGAGCAACGGAACAAGGTAACCCAAGACTCCTGAATGAGATCTACACAGAGCTCTACATCACAGAGAGTGAGAGTGGAGAGATCAGTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGATCAACAACAGAGGACACAGCGATCAAATGCAGAGACATCTTTACACCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATTGGAAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGATCAATCTGATGAAGGACAAAACACTCAGTCTGTCAGATCTCCTGCATGTATTTTTCCCTGAAACAAAAGATATTGACATTTTTagtgacaaatataaaatattgttcatctttgatggtctggacgAGTGTCGTCTTCCTCTAAATTTCAAAAGCAATGAGATTCTACAACATGAGACCAAAACATCATCAGTGGACGTGCTGCTGACGAACCTGATTGTGGGGAATCTGCTTCCCTCTgccctcatctggatcacctccagaccagcagcagcagatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATgaccctcagaaggaggaatacttCAGCAAGAGAATCAGTGATCAGAGTCTGGCCAATACAATCATCTCACACCTGAAGTCCTCCAGGAGCCTctacatcatgtgccacatcccagtgttCTGCTGGATCTCAGCCACTGTTCTGGAGAAGATGTTGAGTGAAGCAGAGACTGCAGAGATCCCCAAGACTCTCactcagatgtacacacacttcctGATGGCACAGATCAACACCAAAGACGTGAAGTATActggaaaaaaagacaaagacGTGATCTTCAAACTGGGGAAACTGGCGTATGAGCAGCTGGAAAGAggcaatgtgatcttctatgaggaAGACCTGAGAGAGTGTGGCATTGATGTGGCAGAAGCTTCAGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGGGAAAGTCTTCAGCTTTGTTCATCTGAGCGTTCAGGAACATTTAGCAGCTCTATATGTGCACCTCTTATTCACAAACCACAACAGAAATGTGTTTGAACCAATTACTAAACAAACTTTGCACTCCATGATCAGGAACTGGTTTAAACCCAAGCCATCAAAACAAGTTTCAATATCTGAGCTGCATCAGAGAGCTGTAGATGAAGCTCTACAGGGTAAAAATGGAGAACTGGACCTTTTCCTCCGGTTTCTTCTGGGTTTGTCAGTCGAAAATAATCAGATTCTCCTACAAGGGCTAACAAAACAGACAAGATGCTGCCCAGACAGCAAGGAAACAGCTGATTACATCAAGAAGAAGATCAGGACCACTCACTCTCCAGAgaaattcattaatttgttctaCAGTCTGAATGAACTGGGTGATCATTCACTAGTGAAGGAAGTAACGCACTATCTGAGATCTGGAACAATCAAAAAGTCCAGACTCTCTTCTTCCCATTGGTCAGCTGTAGCTTTTGTGCTTctgacctcagaggaggagctgaaTGAATTTGATTTCAAGACGTTTGTTGAAGGAAACAATAAAGCTGAAAATTTGCGCGTTTTTAAGAAACTTGTGCCGGTGATTAAAGAGGCCAGATTAGTTCAGTAAGTATCAAAGAGAACA

Function

symbol description
si:ch211-181d7.1 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-14 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000088274

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018662 False 3464 mRNA 0.43 11 42693455 42720384
TCONS_00018663 True 2171 mRNA 0.44 4 42709109 42719796

Neighbor

gene id symbol gene type direction distance location
XLOC_009504 NA coding downstream 135458 42551423 ~ 42557997 (-)
XLOC_009503 FP340266.1 coding downstream 164551 42528790 ~ 42528904 (-)
XLOC_009502 farsb coding downstream 409625 42264891 ~ 42283830 (-)
XLOC_009501 NA coding downstream 467695 42219583 ~ 42225760 (-)
XLOC_009500 pax3b coding downstream 486565 42163356 ~ 42206890 (-)
XLOC_009506 si:ch211-181d7.1 coding upstream 2742 42723126 ~ 42736433 (-)
XLOC_009507 CR457441.1 coding upstream 8086 42728470 ~ 42728586 (-)
XLOC_009508 si:ch211-181d7.3 coding upstream 20888 42741272 ~ 42760110 (-)
XLOC_009509 BX890602.1 coding upstream 353539 43073923 ~ 43119191 (-)
XLOC_009510 ap1s3a coding upstream 434360 43154744 ~ 43164591 (-)
XLOC_009499 NA non-coding downstream 543875 42148976 ~ 42149580 (-)
XLOC_009498 LO018107.1 non-coding downstream 553619 42136087 ~ 42139836 (-)
XLOC_009511 NA non-coding upstream 452758 43173142 ~ 43187543 (-)
XLOC_009515 NA non-coding upstream 790166 43510550 ~ 43512072 (-)
XLOC_009517 NA non-coding upstream 923460 43643844 ~ 43650523 (-)

Expression


Co-expression Network