XLOC_009517


Basic Information

Item Value
gene id XLOC_009517
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 43643844 ~ 43650523 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019250
aaagaaattctttaaaaataataagaagaataagttTACAAtaagagcaaaaaaataaataaaagttcacATTAAGGAGTCAATATTTCCTCTTCCCAATTATTTACTGTGTATTAGATCTGAAATCAACTGAACAGGGTAAGCCTTTGATAAAGTCTAAAACAGGGTTCCAGGTCTTGTAAAAAGATTTGAGAGATCCTGCTTTCGCCTGTTTCCTTTCAAATCGCCTGTTTCGATTTGATAAGAATAGCTCGTCCAGCTAAAAGAGTAGAAAAAGCAATAACCTGGCGAGATGCAACAGTCAAGTCAACTCTCTCTGAAATACCTCACTCTGTCAAGGGGTTAGGGTCTAGATTTATGTTGATAGATTTATTAAGTGTGTCAAAAACACTGGACCAGAAATTTTCCAATTGGGGACAACTCCAGAACATATGGAGATGATTGGCAGGAGACAACGATGACAGGCATCACTTCTATCAGGGAAAAATTAGGCTAATTTGGCATTGGTTAAATGAGCGCTATGGAGCACCTTACACTGCATAAGGCCATGTCTGGCGCATATAGAAGAGGAGTGGACCGTCTTTAAAATATCATCCCATTGGTTTTCCGTAATATCAACACCAAGGTCATTTTGTCTTTATAGACATTCCTGAGGTTATTTCAAACAACTAATCTGCATGAAAGTCCAAAGAAGAcaaatggctgcgtccgaaaccgcatacttccatactatatagtacgccaaaatcagtatgcgagccgtgtagtatgtccgaatacatagaattcgaaaatcagtaggcgagaagtacccggatgaaagtatcccatgatgccccgcgagcgaattcatgaatgggagtgaagcgacgcaaattacgcaggtaggtcgcgtgaccatgacaaaatggcggatgtagtacgtccgaattccattcctactttcacattcatactgtatagaacgtactttactaacggccgagtagtacgtttaagttcaaatacagtacctactgagtcgtaggcggttttggacgcagccaatTAACTTGCTCCATCTCTGACACAAGCTATAATGAGCTGCAGgtgtttcatgttgactttacaTGTACCTCACTTTAGCAGAAGGGCTGCTTATCTTAAAAATGTAAATCGTTTACTTTAAACctattttaatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctacctacctacctacctacctacctaaccacccacccacctatccatctatccacctatccagctatccgtctatccgtctatccatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctaatcagGTTTTTCTTCATGCATAATATCAGTTCGCCATCAAGCCATTCGAATCGCTTTGGTTGATCATTCCAATTGATTGTGTAAATATCAAGGGCATGCGCACAGCAACAAGTCTAGTAAAGTTTTAACGGTGACTTACTGTTAAAGCTGAACAATAGCAGTAATTTTACACGAGGACGAAACAACAGAGAATTTTACGATGTCTTTTTCTTACCATTCTTTTGTGTACAGAACGTGCTTAGATGAATGTGAGGCTACTCAAGTGTCTAGCAACTATCTGAAAAACAGAGAAGTCAAATTTACCAGTAATATTTATCTTAATAGAGCTTTTAGTGCCAAAGGGgcgagggagggagggagggagacgGGACGAGATGTGTGTTTTTTCGTAACCTAATGATATGAATCGTTTTTATGGTGATGAGTTTTCTTTTTATAtagtatggatatatatattaTACCAGACTTTGGGACTCAAAGCAATACAAATCATACGCATATAGGAAGCACATCGGCTTTAGAAAATGTGTGCGGCATCATTTCTGTCATTGAGAAATCTTCCACCGTCTCTGATGTCATATTTTGGAGATTTCGAGATATTTCACGGATATATGTGAAATGTTTTTGACTCTAAGACTCTTTAGTTGATTGCTATTTGAtaggtatttatttaaatatgttccaAGCATACCATAAAAGCCAGCTTATGATGTGTTGTAGCAATACTGACGTTATGATAATAACACATGCTGACAAATCCACGATGGCTACTTTCAGTGTAAACTGAAAAATACTTTCAGTGTTTTCTGTGAATGAAATATAGTCTTCATTAGGGGATgacaaaataacaaacataatCTAAAATATCTGACACTTTTCCCTCACAATTGAGGAATAAAAAGAGTCATGGTTGTAAAACAAAAAGGTATGAACTGCAAAGTAAGCAGAGGAAACTTTAAGTAAAAACTAGGGGAAATTTTAAGGAAACAACGGTGAAACCTTTAACTTGCAGTTCTGAAAAGCAAAATTTGAGTTGCAAgatttttataaaaaagaaaaatctgaatTACGAGATGTAAATTTGcaattctgagtaaaaaaaaaagtgtttgcattCCTAAGGTAACAATTCAGAACTGCAAGATGTAATTCTGAGGAAACATGTTAACTGCAGGAATTACTTGCAAGTCTTCTGCATTTACTAAGTCAGAATTGTAAGAATCGAGGAAATCTGAGGGGAAAAGTTCATGCAATTCTGCATTATTGaggtaaaaatacaataattgcAAGAATTGTGTGGCAAAGACACTATTCTGCATGCGAAAGTGAGCATTGCAAGATGTAAACTGTTCTGAGGACAAACAATGAAttgttaaaacaaatttaattatgaaGGAACAGGtttgttttgaaatatatatataatataatattaaattctCAGGGAAAAGTCTGAACTGTGAAATGTAAACTTGTAATTGTGAGGGGGAAAAGTCAGAAATGTGTGATTAAAAAGTCACAGAAGctccattttttttattccatgtcAGAAACCAGCTTATATATTAAAGAGCAGGTCATGCGTTATTTTTAAAGCATCCTGATATCATGTTTGATGCATCTAAAATCAGAAAACATTTTCTTATAATATACGTTTAATATTAGAACCATTTGCAGTGATTTCAATAAAGGGTTTGTTTGAATTAAATCAGGCTTAAGCTCTGTAAGCCCCTCCCATTGCATAAACcatctctgctctgattggtcagctggccaagtctgttttgattggtcattATATTTTGGAAACAAAACTCCCAATTTAGAATGATATTATGCGAGCAGGCAGGGGttatgcaaataatacttttatcaTGTTGACGACGTAGATCagggaaagatttaaaataagtcacgtaattttttttttttttttaggttttagcACCAATTTGTTAGCCTTACGTATATCTAGTGGGTGGCCCGTTTCCACTTAGTGGTCGGTATggttcacctttatcaggcttgcgtttccactgctaaaagagTACcaatggtgggcgtggtgtacgacagaaagtttcatttTCGCCGTCATtttcgctcgaggaaatgtcacaataaagctgtacgggtccttcacatatcatatgagaagcacttcttacaaaacacatatgctttatacacataaaaacaTCTGTATGAAAGGATCAGATGTTAGacgcacttcaataatcacgcacatGTTATGTGcagacaacaaggtttgtttgagctcaggtcgaccatggcttgttattatatgtatatattattacggtgtaatgtctccgctgtgtatttaaaacatggtggttgctttgttttcattcttgcTTGTTGCACAAgcaagtgacgtatctctgtaaaccaatagcgttcagttccacatctagctccgccttttggtatccTTTTGTTGTGCTTGGTATACCTCTTGCAAAGGGGACCCAAAATGTGGTGCGGTACAGTTCGCTTTTAGGTATAAAAGTGCACCGAACCGAATCGCACCCtactagtgtgctccaaaacagtgacttAATTcgtatttagaagatataaacagcCTAAATGGTTCAACAATtttcatactttagtttctcatcaaatcttctgaccaatcaaatgctctatagTATCAgaaaagccccgcccccttcaagacgcttcacgTTTGCTTTTCATTAGATGCACTTAAACTCTCAACCAAATACTATTGGCTAATTTTAAAGGTGAGGAGCTCCTATATGCCCTATgtctttatatttaaattaagattacaccaaatattgaattaaaaaatgcatatttcaaagaaCTTCATGGGACCTATAAGGTAATTTAGAATCGTCTCTTTCTTTTCAGAGACGATATCTTTTTTAGCGTTTTtagcatctgtttttttttagcacaaGGACAGCTAGATTAGCTACAAAATGCgaatatattcagttgaagtcagaattattagcccctctttgattttttttttactttttaaaatatttcccaaatgatgtttaacagcaaggaaattttcacagtatgtctgataatatttttttttctggagaaagtcttatttgttttatttcggctagaataaaagcagtttttaattatttaaacaccattttaaggacaaaattattagcccctttaagctatagtttttcgatagtctacagaacaaatcactgttatacaataacttgcctaattaccctaacctgcctagttaacctagttaagcctttaaatatcactttaagctgtatagaagtgtcttgaaaaatatcaagtcaaatgttatttgctgtcatcatggcaaagataaaataaatcagttattagagatgagttattaaatctattacgttagaaatgtgttggggaaaaaatctgctttccgttaaacagaaactggggggaaaaataaacaggggggctaataattctgacttcaactgtatatacatatttttgaGAAACCCACATGACCTGCTCTTtaagatgataaaaaaaaatgttttgaaaccgCAACCGAGGTCTTGCTATAAAAGGACGTTCTTTCCCCAGTGAAGATATACTGCGGTCAGCATAACCTCATCCTTCCTTGGCTTCTGTTTATCTTTATAACACATATCAGGGTGGTATATGAAATGATAAATCTCCATAACGTGCGTGTCATCCGGTAAATAGGCTTCTGTGTTTTTGCCACAGGTAAACACAAACAGCCGGAGAGATTATTCAGATTTACTGCGCTACATTAGAAAGCAGCTGCGGCTTAAATTTCATTCGACGAgatcaaaaaaaaaacacgacGCTTGAAAGAGCCTGTGAAAGATTAATAATGAATCTGCCCCTGGAAGGCGATCTCTGCTTTTTTTCTCAGTTTCTCTTCATTAAGTGGGTTTATGAACATGACGGATACATTTGTAAGAGCTCTGGGTTGAATGTCAATGTTGCTATTGAGGTAAATTTGCTTTTATATGCTCACATTATTAATATAGTTTCAGATAcgtattgtttgcaaattctgAATAGAGAAATTAGGttatcagccaatgactatcaaagtaaaaCATCGTTCACAGTCGATTAAATAGCGCTAATGTTTTGAAGTCATTAATAGGCTACATGCTATTTAAGATCCAACATTTAAATTAGCATGTCCAAGCTGTTTAAATATGAATGaaagtgcgaatataaaaccaacgttACCCTAATAATGTTGCTGCCTATCGGAGACTCACATTGATGTTTACATTTGACTATTTTCTGACGTTTTTTTAGTGTGAAACTGTGTTTTGAATGTGTCGCACGGGTTCATGAAGGACGGACGGGACTCCATCTCAAGTGCTTAACATCTTTTTTGTGGACAATTCTTTaagtgatgtttttttattattattttggttaaatctctatctatatatctatatattggGACTTGTGTTTGCGATTCTCTGCGGTAGAGATTCTGTAGAATGTGGATCATCATTGATGTGGTTCTGCGGATGAGTTTTGTTGACATTTGTTGATATTACGGTTTCTTGCAGCTTTGTGGAGAAAACTCAACAACGCGGGGAAATGGTTTATTGgctgtattaaaaatatttccccaTTTTTCTTCTCAACATGGAAACGTTGTGGTGTAATATGAAATCTTTCCagtcattattaaaaatattgaaaatagaGCCAGCTGTCTGTGTAATTGGCGACTCGGCTACAACTTGGAGtgacacttttttatttacatttgtattatgttaaaagtttttatcatgtttatttattgactttttgttattttagtacAAGTTAAAATTAGAAGTTTTTGCAAAAAAGAATTACATATTGATAAtaatacacttcctgacaaaagccttgtcgttgatctcagttgtaagagcaacatatAATAATTCgacttatagttgatcatttggaaaagtggcagaaggtcgatttttctgattaATCGTCTGtagatctgcatcccaatcatcacaaatactgcaaaagacctactaAAACCCAcatgacccaagattctcacataaatcagtcaagtttagtgaaggaaaaatcatggtttggggttacattcagtatgggggcgtgtgcaagagatctgcagagtggatggcaacatcaacagcctg

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0032940 secretion by cell biological_process
GO:0140029 exocytic process biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048278 vesicle docking biological_process
GO:0098657 import into cell biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0007601 visual perception biological_process
GO:0042551 neuron maturation biological_process
GO:0099500 vesicle fusion to plasma membrane biological_process
GO:0055075 potassium ion homeostasis biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0055078 sodium ion homeostasis biological_process
GO:0007626 locomotory behavior biological_process
GO:0140115 export across plasma membrane biological_process
GO:0023061 signal release biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0061024 membrane organization biological_process
GO:0061025 membrane fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030003 cellular cation homeostasis biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0051640 organelle localization biological_process
GO:0051641 cellular localization biological_process
GO:0051648 vesicle localization biological_process
GO:0051649 establishment of localization in cell biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0033176 proton-transporting V-type ATPase complex cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097447 dendritic tree cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005416 amino acid molecular_function
GO:0015185 gamma-aminobutyric acid transmembrane transporter activity molecular_function
GO:0005484 SNAP receptor activity molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0016887 ATPase activity molecular_function
GO:0008028 monocarboxylic acid transmembrane transporter activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019250 True 6680 lncRNA 0.36 1 43643844 43650523

Neighbor

gene id symbol gene type direction distance location
XLOC_009516 ctsc coding downstream 18295 43604032 ~ 43625549 (-)
XLOC_009515 NA coding downstream 131772 43510550 ~ 43512072 (-)
XLOC_009514 prss16 coding downstream 315933 43286785 ~ 43327911 (-)
XLOC_009513 serpine2 coding downstream 359823 43241915 ~ 43284021 (-)
XLOC_009512 wdfy1 coding downstream 405624 43208593 ~ 43238220 (-)
XLOC_009518 CABZ01044962.1 coding upstream 1123 43651646 ~ 43651761 (-)
XLOC_009519 grm5b coding upstream 5718 43656241 ~ 43768776 (-)
XLOC_009520 CABZ01073033.2 coding upstream 174149 43824672 ~ 43873005 (-)
XLOC_009521 chordc1a coding upstream 311291 43961814 ~ 43978141 (-)
XLOC_009522 nlrc3l coding upstream 331565 43982088 ~ 43995053 (-)
XLOC_009511 NA non-coding downstream 456301 43173142 ~ 43187543 (-)
XLOC_009509 BX890602.1 non-coding downstream 524653 43073923 ~ 43119191 (-)
XLOC_009507 CR457441.1 non-coding downstream 915258 42728470 ~ 42728586 (-)
XLOC_009504 NA non-coding downstream 1085847 42551423 ~ 42557997 (-)
XLOC_009523 NA non-coding upstream 349007 43999530 ~ 44020074 (-)
XLOC_009524 NA non-coding upstream 366910 44017433 ~ 44017563 (-)
XLOC_009528 NA non-coding upstream 468710 44119233 ~ 44123107 (-)
XLOC_009530 NA non-coding upstream 720044 44370567 ~ 44393774 (-)

Expression


Co-expression Network