CI01000049_00848509_00854128 (ALG11)


Basic Information

Item Value
gene id CI01000049_00848509_00854128
gene name ALG11
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 847658 ~ 854128 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_00848509_00854128.mRNA
ATGGCCCATTTAGGCTCCAGTCCAGTAGGTGGCGAAAAAGCCGTTTGCCAAGCTCCATTAAAACAACAGCCGACCAGTGCTGTTATTAATAGGAAAGATGGATTATTGTATGTGGCTTTTGCCATCCACAGGTTACTGTGGTCACTGCTGTTACCATGCTTCTATCTGAGTCTTGTCCTGACAGCCATCCTCTTCCTCTTCATCATGGGGGTGAGAACCTGGCTGCAGATGAAGAGGAAGACCAGGAGAGCTCAGGATGGCTGGCCTGCCGTGGCCTTCTTCCACCCATACTGCAATGCGGGAGGAGGAGGAGAGAGAGTGCTGTGGTGTGCTTTACGTGCTCTTCAAAACAGGTACCAAGATGTTTCCTTCGTGGTCTACACAGGTGATCAGGGCGTGACAGCAGAAGAGATTTTAGATGGAGCACGGCGGCGCTTCAACATCAGACTCCCCAGAGCTGTTAAGTTTGTGTTCTTGAAACATCGTCTCCTGGTAGAGGCTAAACTTTACCCACACTTCACCCTTCTGGGGCAGAGCGTGGGCTCCATCTTCCTGGGGTGGGAGGCCTTGACTGAGTTTGTTCCAGACGTCTACATTGACTCAATGGGCTATGCCTTCACCTTACCTGTGTTCCGTTATCTGGGTGGATGTCATGTGGGAAGCTATGTGCACTACCCAACCATCAGCACTGATATGCTGTCTGTGGTTCGAGAAAGAAACCCAAGGTTCAATAATGCAGACTACATCTCCAGTAACCCTGTACTGAGTGCCATCAAAGTGATTTACTACTGTGTCTTCGCACTGCTGTACGGTCTAGCCGGCTCCTGTAGTGAAGTGGTCATGGTAAATTCCACCTGGACATTAGGTCACATTTTGGCTTTGTGGCGCGCTCCTAACCGTACGAGTGTGGTCTACCCACCGTGTGACGTTCAGGCCTTCCTGGACATCCCTATTGGGGAAGAGACTGAAGAGAAAGAAGGCAAAAAGTGTCACTGTGTAGTCTCGGTGGGCCAGTTCCGGCCTGAAAAAGACCATCAGCTGCAGATCAGGGCTTTTAGAAAACTTCTGGACAGGAAGGGGGTGGAGACTGCCGGTCGAGAGACCGTGAAGCTGGTGTTGATTGGTGGATGTCGTAACCAGGAAGATGAAGACAGGGTACTGATGCTGAGGGGATTGTGTCAGGAGCTGGGCCTAGCAGACAGGGTGGAGTTTAAACTCAATATCCCATTTGAGGAACTGAAGAAAGATTTGACAGATGCCACGATTGGGTTGCACACAATGTGGAATGAACATTTCGGTATTGGTGTAGTGGAGTGTATGGCTGCAGGAACAATCATTCTAGCTCACAAATCCGGTGGTCCGAAGTTGGACATTGTAGTTCACTATGATGGCGGTCCAACCGGCTTCCTGGCAGATGATGAAGACACCTATGCAGACGCCATGGAACGAATCCTTTCTATGACTCCCGCAGCTCGGTTAGAGATCCGACGCCGGGCCCGTCTGTCCGTCACCCGCTTCTCAGACCAGGAGTTTGAAGGTTCATTTCTTGCAGCCGTGGAGCCTCTAATGTCAACACTGAGACTATGAGAGTGATGGAGGAGGGGGTCATGGTACTCTCACCATGTCTTTGTCCTGACTGGCTATTGTGAATCAGCCCCATATAGTTCAGTCTAGTTCACAAGCTTGTACTGGCCCTATAATGCTGACTATGAATCATTCCGTGTCTAGAGCATAAGTGAGCAATTCTTACCGACCTGTCTTGTGAACATTTGCTCTTTAATTATGAAACATCACAGCATCATGGGAAATGCTGGTTCTGGTGAGATGCCACTTTCTGCTTTAACTTAAAGATAGACATTGAATGTAGGAGTTACACACTGCAGATGAACAGTTGATTTTGTTTCATTTAAAACACATGCTGTTTTGTCTTCATATATTTTATGTACATTATATAAGATGATAAATATAGTTTATAATTATAATAGGTTTGTTTTGTTTTATTGTTTAAGAGAGTTACAAAAGAGAGTTGAAACCACAGTGTATCAAAAAATGTATGTTTCTCTTGGAAGATTCAAACATTATACTAGTGCTTAATGTTAATTTAATTTTTTTTTTTTTTAATACAATAAATTATATAGAGTGGTGGTCTGAAAATATAACAAGATGGTTGTTCACATCATTTTTAGTAGCAATATTTCTGTGTAATTATTGCATTAGTACACAGTTATTACATTGGACAGCATTGATCAATTCTTAGCATTGTCCCATACAGCTGTCCAAACATTTTACATCATCTAACCAACCTCCAGAAATAGATAAGAATTCTTTTTACAATATAACAGCTATATACAGAAAAGCCATCCCAGGAGCACAGATTCTGGGTAACAGTGTGTCTGTCTAGACTAGATAGCAAAGCGACAGAGAGGGGCCAAATTAAA

Function

symbol description
alg11 Predicted to enable GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ip. Orthologous to human ALG11 (ALG11 alpha-1,2-mannosyltransferase).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K03844 ALG11; alpha-1,2-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_00848509_00854128.mRNA True 2438 mRNA 0.45 5 847658 854128

Neighbor

gene id symbol gene type direction distance location
CI01000049_00841319_00845716 SPP2 coding downstream 1942 839723 ~ 845716 (-)
CI01000049_00769434_00772846 NA coding downstream 74812 769180 ~ 772846 (-)
CI01000049_00732479_00766646 NA coding downstream 81012 732479 ~ 766646 (-)
CI01000049_00720262_00721411 NA coding downstream 126247 720254 ~ 721411 (-)
CI01000049_00715243_00718107 NA coding downstream 128295 714971 ~ 719363 (-)
CI01000049_00980509_01030584 NA coding upstream 126238 980366 ~ 1030597 (-)
CI01000049_01197359_01206811 NA coding upstream 341550 1195678 ~ 1207195 (-)
CI01000049_01247902_01262425 IGF2BP2, IGF2BP2B coding upstream 393332 1247460 ~ 1262425 (-)
CI01000049_01302622_01311542 UBAC2 coding upstream 448483 1302611 ~ 1311700 (-)
CI01000049_01340906_01399870 DACH1, DACHC coding upstream 486778 1340906 ~ 1399870 (-)
G206975 NA non-coding downstream 12544 834821 ~ 835114 (-)
G206974 NA non-coding downstream 13455 833981 ~ 834203 (-)
G206973 NA non-coding downstream 14791 832320 ~ 832867 (-)
G206972 NA non-coding downstream 17183 830190 ~ 830475 (-)
G206925 NA non-coding downstream 23082 822596 ~ 824576 (-)
G206916 NA non-coding upstream 3304 857432 ~ 859882 (-)
G206978 NA non-coding upstream 7074 861202 ~ 861519 (-)
G206931 NA non-coding upstream 11882 866010 ~ 867379 (-)
G206987 NA non-coding upstream 53331 907459 ~ 907768 (-)
G206991 NA non-coding upstream 60745 914873 ~ 915141 (-)
G206938 NA other downstream 20013 825859 ~ 827645 (-)
G206850 NA other downstream 214463 632680 ~ 633195 (-)
G206849 NA other downstream 216082 631143 ~ 631576 (-)
G207278 NA other upstream 1132883 1987011 ~ 1988767 (-)
G209491 NA other upstream 5173961 6028089 ~ 6028469 (-)
CI01000049_08056071_08059039 TIMM10.S, TIMM10, TIMM10.L other upstream 7201505 8055633 ~ 8059179 (-)
CI01000049_08452153_08453389 CISD2 other upstream 7597014 8451142 ~ 8454233 (-)
G211175 NA other upstream 7611165 8465293 ~ 8476265 (-)

Expression


Co-expression Network