CI01000049_02593696_02606225


Basic Information

Item Value
gene id CI01000049_02593696_02606225
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 2593507 ~ 2606270 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_02593696_02606225.mRNA
TTATAAATGTACTAGAAACACTATCTTGTCAGAAAAGAGAAAAGTTTGCTTCGAGAAAGGTTTGTATGCTTCATGTGATAGAGCTAGAATGAGCTAGAGCTGGAGAGTAGAATCAGCCTCATTCATCCTTTTTATTGGCCCAGATAAGAGTGGCAACTGAAATGTTGTTGCTCATGTTTATTCTTCATGATGGGGAGCATGCAGGGAGCTCTGCTTTGTAATGTAATGAGCCTCTGTCCTAGCCACAAAGGTTTTGCTTCTGCCTTCAGAACCACTGATACTCTAAAGGCCAAGCACACGGCAGCACCGGCTTTTCTGTATGATGTGTGGATCAACCCAACTCTGACTGTGAATACATTCATGAGCTCTATGCAAGCCTGCTTAGATCTGTGTATGGTTCATGTGGTGAATGTCAGAGCAAATATGTGGGGTAGAAATGAGGGAAGTTGCCACTCACACTCACTGTGCGGACGACTCTCTGCCCCCCGCAAACGAGTTGTCACGTCACTTCACAATGACACCTCTCGCACTCTACGCAGAGAAATGGAGAGCGCTGCCAGGCGCGTCAAGACCGTCCTGTTTCAATGCCGTGATAATGTCTGCAGTTCACGATCTAAACGCCCCGTTTCTGAGAACGGAAGTTCAGAATCTGCTTATCAGTTTACCGTCCTTCCCTTCGGTCTGTCTTTAGCTCCACGCACGTTCACAAAGTGCATGAATGCTGTTCTCTCCCCTCTACGTCTGAACGAAGTGCGCATTCTAAACTATCTGGATGACTGGCTGCTCATGGCTCATTCAGAGAATGTGCTGGACAGTCACAAGCATATGCTTATCAACCACCTGCAGTGTTTGGGGCTTATGATCAATTTTCAGAAAAGCAAACTCCAACCCACACAGCGTATTTCGTTCCTGGGGGGTAGCGCCGGCGCGTCCGCCGCCTTAACTACCCAGGTCTTGTTGAAGCGGTTCCAGCTGAGATCATGTTGCGTCATCCCTGCGTTTTGGCATAGCGTAACAACCCTAATGTTGTATTAATGAACCGGGACTTGCCGCTTCATTTTGCAATCACCGTAAGACCAA

Function

NR:

description
reverse transcriptase/ribonuclease H/putative methyltransferase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_02593696_02606225.mRNA True 1080 mRNA 0.48 4 2593507 2606270

Neighbor

gene id symbol gene type direction distance location
CI01000049_02345009_02446004 NLGN4A, NLGN4X, NLGN4 coding upstream 147503 2345009 ~ 2446004 (+)
CI01000049_02238067_02265765 PUDP, HDD1A coding upstream 327141 2237242 ~ 2266366 (+)
CI01000049_02226218_02227671 NA coding upstream 365773 2226218 ~ 2227734 (+)
CI01000049_02081249_02101569 STS coding upstream 491644 2081249 ~ 2101979 (+)
CI01000049_02043240_02052315 ANOS1A coding upstream 541006 2042478 ~ 2052501 (+)
CI01000049_02732074_02754633 NA coding downstream 125538 2731808 ~ 2754752 (+)
CI01000049_02827101_02828949 NA coding downstream 219560 2825830 ~ 2829760 (+)
CI01000049_02997869_03042673 PRKX coding downstream 391321 2997591 ~ 3042763 (+)
CI01000049_03064154_03077534 NA coding downstream 457884 3064154 ~ 3077997 (+)
CI01000049_03121188_03131739 NA coding downstream 514918 3121188 ~ 3131911 (+)
G206425 NA non-coding upstream 269023 2324226 ~ 2324484 (+)
G206405 NA non-coding upstream 285804 2307421 ~ 2307703 (+)
G206383 NA non-coding upstream 311949 2281281 ~ 2281558 (+)
G206353 NA non-coding upstream 323197 2270003 ~ 2270310 (+)
G206457 NA non-coding downstream 145278 2751548 ~ 2751799 (+)
G206696 NA non-coding downstream 326210 2932480 ~ 2993106 (+)
G206707 NA non-coding downstream 365159 2971429 ~ 2991378 (+)
G206721 NA non-coding downstream 454172 3060442 ~ 3060730 (+)
G206723 NA non-coding downstream 455709 3061979 ~ 3062204 (+)
CI01000049_01840330_01843844 FGF8B other upstream 749679 1839815 ~ 1844077 (+)
G207888 NA other downstream 1017732 3624002 ~ 3624311 (+)
G208074 NA other downstream 1271126 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 1867255 4473662 ~ 4476270 (+)
G209660 NA other downstream 4271863 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 4612578 7218811 ~ 7224268 (+)

Expression


Co-expression Network