CI01000049_02827101_02828949


Basic Information

Item Value
gene id CI01000049_02827101_02828949
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 2825830 ~ 2829760 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_02827101_02828949.mRNA
GTATAAAATCAAATATGCACTACCTGCTGTCTTCAGGATTATATCCAATTTTATATCTGCAAATTAGTAGTGTAATTACTTTATTATTAGTCAGGCTAAAGATCAGGAGCCTCATGCATAAAACTTTACATAGATTTCATCCCAAAATCTAGCTTTTGTGCATACACACAGTTTTTTCAGATTCATAAAACAATGCATATGCCAGAACCTGCACAACATTCACTTTATAAAACCCTGTCAGCTGAAGATTGTGTGTACGTGCATCTCCACCCCGTCTCCTCCCCGAAATAACCATATATCCTCATCTGCATATAATTTTTCACATGCATATTCCCATCCACATGATACCATGTATAAATTCCATTTGTGCAGTACATTGCTACAAAAAAAAAAAAAAAAAAAAATCAGTATCTTTGTCTTGTTTTAGAATAAATAAAAGCTTTCAAAATATCCATAAAAGCTAAACTGAATAAAATAATTTTCAGAGAAAGTTTTTAGAGACAAGTTATTCTCATTCTTTTCCACTGGACAAATAGTAATTTTAACTGTTTTAAACAAATCAGATTTATAAAACTGTGTTTTATAAACATGTTTCAGGATGTTTATATATTTTTTATTTGAAACGGATAGTTTTTTTTTTTTTTTTTTTCATTGTAAATACAATTGTCTCAGTGCATCACTGACAAAACATTAAAAAAAAAAAAAAATATATATATATATATATATATATGCAAATTTGTTCCTTCAAATCCTATCCTTCAAATATAATTGCATTTGCAGAAAGATTACAGAAGGAGTTATCATTAGGATACTGTCTGCCTGCACATGTTATTAACACCATGCCTCAGTGCAGCAGTGGTTGTACAGTATTGTCATTCGACTTTTCAAACTGGCCAATAGACCGTTCTACCACCAAACGAAAGTGTGCATCATTGATCATTGTTCTCCGAGAAATATATTCTCAGAACATGAGTTATGCAATTTAGTTTAAAGAGGAAGTATCATGCGCCTAGCACTTGTTACACCTGTCAGCTGCGGTGCCATTATGTACCAGCAGATGGCAGCCTCATCCCTCAATGTCTCCATAGATTCTGTTATTCCTGGACTACATTTCCCAGAACCCATTGCTCATTATTAGTTTACTGGTTTCAGCTGTGTCTTGTTAATCATATCATTACCCTGTCTATTTAAATGCCTTTTGCCCTGTATTCAGTATGAAGTCTTGTTTGTTTTGGTTTGCATGTTATGGTCAGCATGTGAGACAAGTTCCGATGGCCACAGAGCTTGGCCAACATTTTCCATCTGTACCCACTCTAATGCTGAAAGCTCCAGTGATTACAACGCTAACCAGTGCAGTCACGTCAGAGCCACCAGTCACCAGTACAGTCACGTCAGAAATGGCAGCCACCAGCGCAGCCATTTCAGAGCCACCAGCCATCAGCGCTGTCACGTCAGAACCGCCAGCCGTCAAAACAGTCATGCCTGAGCCTCCAGCAGTCAAAATCGCCAAACCAAAGCCTCTAGTTATTAAGGAAGAGACCTTACAGTCTTTAGCTGTCACTGACACCATCCCTGTGTTCCCGGGTGTTGTGGACTCTGCGATTGAGGATGCCAAGGCATCCTATCCACGTCAGGGCTTGATATCAAATTTGATGGATCCACCTCAGAGAACGCTTGTTCCAGTCTATGAGTCTGTCCCTGAACCTGCTCCAAATGATAAGTCTGCTCCTGAGCCTGTTCCAGTCTATGAAACTGTTTCTGTTTCTGAGTCTGTTCTTGTCAATGAGTCTGTAAACTCTAAACCTGCGCCTGTCCACGAGCCTGGCATCAAGCCTACTCCTGAGTTAACTCTGCCACTCCAGTCACTAATGTGGATGTCAAGTCTATATGCCTTGTCAGCTTTGAGAAGTCTGCCTGGCCCTGGTTTGCTGCTGATCTGCCTTGGGGGTTTCTGGTCCCATCTGCCCATCTGCCTCCCAGGGTGCTCTGTCTTGGAGACTTTCTGTCCATCATGCACCGCCCTGGAGACCTTCTGTCCAGCGGGCCACGCCTTGGTTGTCTCCAGCTTTAAGAGCTCACTATATCCAGCTTGTTAGTCTCTGGTTCTCAGCTTTGCTTCTGCTCCTGTGTCTGTTTCTACTCCATGGTCCTGGCCCACCATGCTGCCACCCGGATCCGCCTCTGTTCCACCTCCCAACGGTGTTGGAGCGTCTGGAAGCCGCTCCTTCGAGGGGGTCTATGTTACACCTGTCAGCTGCGGTGCCCTTATATACCAGCAGATGGCAGCCTCGTCCCTCAATGTCTCCACAGCCTCTGTTATTCCTGGACTCCATTTCCCAGAACCCACTGCTCATTATTAGTTTACTGGTTTCAGCTGTGTCTTGTTAATCATATCATTACCCTTAATGCCTTTTGCCCAGTATTCAGTATGAAGTCTTGTTTGTTTTGGTTTGCATGTTGCGGTCAGCATTCAGCAAAAGTGTTTAAAAGCAGCATTAAATTCATATTTTTGTTTAACTTATGGATTGTGACTTTATGTAAATTGAGTGCTTAACTCCATTAATGAGAGTGGAATATTTAACCCAAATGTGTATATTAAAAAGAAAATGGAGTTAAAATGAAAGTGAAGTTTACTTTTTTATAAATCCAGATATGTGCAACATTTATACATCAGTCCCCAGGTGTTGCTCCAGTGTGTTCTGAATTCACAAGGTTAATGAGAGGTTATTTCTAACAGCAGAATTAAAACTGTGTTTAGTAAGTACATTATCTCTCAATACAATGAGAAAAGTCGTTAATGTGTGCCAGTGGTTTATGCTGATAAGTAAGCTGCCAGTAAAGATAGATTATGGATATGAGCAACCCTATGTTTCAATGGGTGAATTTAAAATGAGCTAGTAATGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_02827101_02828949.mRNA True 2907 mRNA 0.40 3 2825830 2829760

Neighbor

gene id symbol gene type direction distance location
CI01000049_02732074_02754633 NA coding upstream 71078 2731808 ~ 2754752 (+)
CI01000049_02593696_02606225 NA coding upstream 219560 2593507 ~ 2606270 (+)
CI01000049_02345009_02446004 NLGN4A, NLGN4X, NLGN4 coding upstream 379826 2345009 ~ 2446004 (+)
CI01000049_02238067_02265765 PUDP, HDD1A coding upstream 559464 2237242 ~ 2266366 (+)
CI01000049_02226218_02227671 NA coding upstream 598096 2226218 ~ 2227734 (+)
CI01000049_02997869_03042673 PRKX coding downstream 167831 2997591 ~ 3042763 (+)
CI01000049_03064154_03077534 NA coding downstream 234394 3064154 ~ 3077997 (+)
CI01000049_03121188_03131739 NA coding downstream 291428 3121188 ~ 3131911 (+)
CI01000049_03133436_03158345 DHRSX coding downstream 303537 3133297 ~ 3158677 (+)
CI01000049_03214802_03219475 CHMP2B.L, CHMP2BA, CHMP2BB, CHM2B, CHMP2B, CHMP2B.S coding downstream 384764 3214524 ~ 3219586 (+)
G206457 NA non-coding upstream 74031 2751548 ~ 2751799 (+)
G206425 NA non-coding upstream 501346 2324226 ~ 2324484 (+)
G206405 NA non-coding upstream 518127 2307421 ~ 2307703 (+)
G206383 NA non-coding upstream 544272 2281281 ~ 2281558 (+)
G206353 NA non-coding upstream 555520 2270003 ~ 2270310 (+)
G206696 NA non-coding downstream 102720 2932480 ~ 2993106 (+)
G206707 NA non-coding downstream 141669 2971429 ~ 2991378 (+)
G206721 NA non-coding downstream 230682 3060442 ~ 3060730 (+)
G206723 NA non-coding downstream 232219 3061979 ~ 3062204 (+)
G206654 NA non-coding downstream 251220 3080980 ~ 3081443 (+)
CI01000049_01840330_01843844 FGF8B other upstream 982002 1839815 ~ 1844077 (+)
G207888 NA other downstream 794242 3624002 ~ 3624311 (+)
G208074 NA other downstream 1047636 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 1643765 4473662 ~ 4476270 (+)
G209660 NA other downstream 4048373 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 4389088 7218811 ~ 7224268 (+)

Expression


Co-expression Network