CI01000049_03121188_03131739


Basic Information

Item Value
gene id CI01000049_03121188_03131739
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3121188 ~ 3131911 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03121188_03131739.mRNA
ATGTGGTGGTTTTTGCCTTGTATCCTCGGCTTCATCAGACTCTACTTAGATGGCGTCAAAGTTCTCCTATACCAGCTTTTCAACAAATCGTTCACTCTGCCAGATTTGCCAAAGCAGAATGGAAAGGTTGCCATAGTTACAGGGGGAACCAGAGGAATGGGATATGAGATTTCCAGACATCTGGTCAGCCTGGACATGCATGTTATCATTGCTGGGAATGAGGAAGAGGAGGGTCTGGCAGCAGTGAAGAAGATTCAGGAGTTGAATCGGGGAAAAGGTGATGATTTACTCCACCATGACCTGACACCTCTTAACTTGCAGCTAAACGGGATCATTTTTCTTGCCATGTTTGGACTGCTGGCACTGTACCTCTGGTGCCAAGACTACCTCATTACCACACTCTTTGGCACATTCAAACTGAAAATGTTAAGAGAAAGAGGAAATAAGGATGAGACGGGTATATTCCATGGCGGGCCGTATGCCCAGATTAACTCACCTCTTATAAAGCAGACCTGTTGGTCCGGTGCCATCAGGAAACAGCACTCAGGAGTTCTGCATGGGCTGTTGTGCTCATTACTGCAGCTCAGATTCTTAATCAGAACAGAACATCTGCAGGCATCCCTGTCCAGCAGCTCTCTGAGAGACATGCCAACGATCAATCATGCCAGGACAGACAGACCACGACTGAAGAGCTTTGAGAAAGTCTCGAATGAAAAGCGCAGAGTGGAAATACATGGACAAAACTTGTCATCAAAGAGTTTCTAGAGGTTGTGATTTTTGGGTTCTGGGGATTGTTGGTTCTGGTCTGTCTTCAGGTTCTGGCACAATATCGAAAATAGGGTGCTTTTACATTTAGTCCTCTTTTCAAGAACCAGACTAAGACGCCTTTAAATGTACGTTGAATATTATATTAAATATTTGAGTATAATTAGAGCTA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03121188_03131739.mRNA True 937 mRNA 0.44 5 3121188 3131911

Neighbor

gene id symbol gene type direction distance location
CI01000049_03064154_03077534 NA coding upstream 43191 3064154 ~ 3077997 (+)
CI01000049_02997869_03042673 PRKX coding upstream 78425 2997591 ~ 3042763 (+)
CI01000049_02827101_02828949 NA coding upstream 291428 2825830 ~ 2829760 (+)
CI01000049_02732074_02754633 NA coding upstream 366436 2731808 ~ 2754752 (+)
CI01000049_02593696_02606225 NA coding upstream 514918 2593507 ~ 2606270 (+)
CI01000049_03133436_03158345 DHRSX coding downstream 1386 3133297 ~ 3158677 (+)
CI01000049_03214802_03219475 CHMP2B.L, CHMP2BA, CHMP2BB, CHM2B, CHMP2B, CHMP2B.S coding downstream 82613 3214524 ~ 3219586 (+)
CI01000049_03247914_03248937 NA coding downstream 116003 3247914 ~ 3249051 (+)
CI01000049_03253972_03255119 HTR1FB, HTR1F coding downstream 122061 3253972 ~ 3255140 (+)
CI01000049_03259617_03273490 NA coding downstream 127263 3259174 ~ 3274591 (+)
G206659 NA non-coding upstream 15849 3103635 ~ 3105339 (+)
G206656 NA non-coding upstream 35051 3084546 ~ 3086137 (+)
G206654 NA non-coding upstream 39745 3080980 ~ 3081443 (+)
G206723 NA non-coding upstream 58984 3061979 ~ 3062204 (+)
G206721 NA non-coding upstream 60458 3060442 ~ 3060730 (+)
G206658 NA non-coding downstream 171889 3303800 ~ 3304088 (+)
G206787 NA non-coding downstream 181574 3313485 ~ 3313916 (+)
G206788 NA non-coding downstream 190819 3322730 ~ 3323199 (+)
G206789 NA non-coding downstream 191655 3323566 ~ 3323905 (+)
G206805 NA non-coding downstream 205668 3337579 ~ 3338144 (+)
CI01000049_01840330_01843844 FGF8B other upstream 1277360 1839815 ~ 1844077 (+)
G207888 NA other downstream 492091 3624002 ~ 3624311 (+)
G208074 NA other downstream 745485 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 1341614 4473662 ~ 4476270 (+)
G209660 NA other downstream 3746222 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 4086937 7218811 ~ 7224268 (+)

Expression


Co-expression Network