CI01000049_03256991_03257622 (CLDNG)


Basic Information

Item Value
gene id CI01000049_03256991_03257622
gene name CLDNG
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3256855 ~ 3257622 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03256991_03257622.mRNA
ACATGTCTACTGGATTACAGCTTCTTGGAACCACACTAGGCATTCTTGGCTGGCTGGGCATCATCATATCATGTGCGATTCCTCTTTGGCGTGTGACTGCTTTTATTGGAAACAACATTGTGACTGCGCAAATAATGTGGGAGGGACTGTGGATGAGCTGTGTGGTGCAGAGCACTGGTCAAATGCAGTGTAAAGTGTACGACTCTATGCTGGCTCTCCCCCAAGACCTACAAGCTTCTCGAGCTATCCTTATCATTGCTGCCCTTTTTGGTCTAATTGGCATATTTGCCAGTTTTGCAGGTGGTAAATGTACTAACTGCTTGGCAGATGGTTTTGCAAAGGCTCGGGTTGCTGCAGTAGGAGGGGCCTTCTTCGTTACTGCGGGAGTCTTGGGTTTGGTGCCATCTAGTTGGACTGCCCATAGGGTCATTGGAGACTTCTACAATCCTCTAGTGGCTCAAGCTCAGAAGAGGGAGTTGGGAGCAGCCATCTTTATCTGCTGGGGGGCAGCGGTTCTCATGCTGATTGGTGGTGGCCTTCTCTGCAGCTCTTGCCCAAAAGGAAGAGCGTCCAGAGGGGGTCGGTATATGCCGGCTTCTCAAAATGGAAGGGAGCGCTTGGAGTATGTGTGACTGCAGGATGTCTGACTATTCTGAGAACTCGTGTGTGGATGTTTTACCTCTTTTAAATGTCTGTTTGTGTGACTTTCTGTAAACCATGAATTTTAACCTGTTGCTCAATTACTGTCTATTGAGCTAATACAATAAA

Function

symbol description
cldng Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including digestive system; gonad; hematopoietic system; kidney; and mesoderm. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 116. Orthologous to human CLDN6 (claudin 6) and CLDN9 (claudin 9).

NR:

description
Claudin g

GO:

id name namespace
GO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules biological_process

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03256991_03257622.mRNA True 768 mRNA 0.48 1 3256855 3257622

Neighbor

gene id symbol gene type direction distance location
CI01000049_03204366_03212170 CREB1, CREB1B, CREB1A coding downstream 44349 3203891 ~ 3212506 (-)
CI01000049_03093994_03098141 NA coding downstream 158714 3093837 ~ 3098141 (-)
CI01000049_03081339_03089363 NA coding downstream 167492 3081009 ~ 3089363 (-)
CI01000049_02876185_02882477 NA coding downstream 373999 2875428 ~ 2882856 (-)
CI01000049_02519296_02524006 NA coding downstream 732849 2519077 ~ 2524006 (-)
CI01000049_03667851_03702669 NA coding upstream 410229 3667851 ~ 3702669 (-)
CI01000049_03749311_03749697 NA coding upstream 490467 3748089 ~ 3752045 (-)
CI01000049_03782311_03782489 KLF5 coding upstream 523789 3781411 ~ 3782489 (-)
CI01000049_03790418_03842410 PIBF1 coding upstream 532364 3789986 ~ 3842605 (-)
CI01000049_03864331_03867898 TPT1 coding upstream 606387 3864009 ~ 3867967 (-)
G207669 NA non-coding downstream 32873 3205642 ~ 3223982 (-)
G207577 NA non-coding downstream 141874 3114159 ~ 3114981 (-)
G207655 NA non-coding downstream 210024 3046605 ~ 3046831 (-)
G207590 NA non-coding downstream 505056 2751471 ~ 2751799 (-)
G207548 NA non-coding downstream 597143 2655915 ~ 2659712 (-)
G207740 NA non-coding upstream 4713 3262335 ~ 3262612 (-)
G207742 NA non-coding upstream 8648 3266270 ~ 3266944 (-)
G207743 NA non-coding upstream 9992 3267614 ~ 3267866 (-)
G207744 NA non-coding upstream 10304 3267926 ~ 3268390 (-)
G207750 NA non-coding upstream 33793 3291415 ~ 3291689 (-)
G207278 NA other downstream 1268088 1987011 ~ 1988767 (-)
G206938 NA other downstream 2429210 825859 ~ 827645 (-)
G206850 NA other downstream 2623660 632680 ~ 633195 (-)
G206849 NA other downstream 2625279 631143 ~ 631576 (-)
G209491 NA other upstream 2770467 6028089 ~ 6028469 (-)
CI01000049_08056071_08059039 TIMM10.S, TIMM10, TIMM10.L other upstream 4798011 8055633 ~ 8059179 (-)
CI01000049_08452153_08453389 CISD2 other upstream 5193520 8451142 ~ 8454233 (-)
G211175 NA other upstream 5207671 8465293 ~ 8476265 (-)

Expression


Co-expression Network