CI01000049_03631096_03632219 (KCTD12.2)


Basic Information

Item Value
gene id CI01000049_03631096_03632219
gene name KCTD12.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3629377 ~ 3632370 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03631096_03632219.mRNA
CTATAAAAGACAAGCTGTTCATTATTTACGATGCACACCCTTGAGAAAAATAAACTATCTGGGGCCTTTAGCTCCCCCTACTGGACAGGCTGGGTGCGCACCTATGTGAATACTGTTGAACATTTCTTATCTATTTTTTTTTTTTTTTTTTTTTAACCCTATACAGGTCTTACATGTCTTGTATGACTGTTAGAAGTAACATTTCAGAACTGTAACTTTGTTAAACAGCTTTGTTTTCGCATTTTTTTTATTACATATTCTAATTTATACTACTGTTATTACATAATGTCTATTACTGAACGAGAATCCAACGATGTGCTTAATTCAGTAGTTTCAGTGTCGGATGCAGAAGTTTGCATGATCCATGAACTGCTTCTTCTTCTTGCCCACTAGATGTCGCTAGAAGAACTGTTGTTATAGACATTGAGCTGCCTGTTTCACTATCTAGAAGTATTAGCTACGTAAACAGCAAAATTATATTAACCAAAGTTCTACCTTTTTAGTTAATGATAAATGAAGAGTTAAAGAATTAAAGGAAATACGAGTATTTCCTCCTTTTGTCACAGCCAGTTGCACATAGGCCTATGTGGTCGTACCCCATTTGTTATAAGGCCTATTATTATTTTAAACTATATTTTCTTTTCTTAAGTTGATTATGTTTAAAACAGCATAAGTAACTAAAACCGTAGGTATAGGCATATTGCTGAAATGGACCAGAAAACCAATTGGCAAAGAAAAAAAAAAAAAAACGTGTTTCGATGTACTTTTTACACTATTTGTACTTTGGGCTTTTTATTTTATTTTATTTATTTTTTTATTACTGGTTCAATAGTTAGTGGATGTAGTGAATGTTTAATGGAAATACAAGGTCATTTCCGGAAAATAAATTCCAATGTTGTTCACAATATGCATCTATGTGTGTATTAAGTACACACTAATTTATGGCAACACTTTATTTTAGTGTCCTTGTTACATGTAGGCCTACTTAGGGTTACACTTTATTTTAAGGTGTCCGTGTTACAGTGTAAGTACTGAGTAATAATAATTAACTACATGTACTTACTATAGGGTTAGGGTTAGGATGAGGGTTTAGTTTAGGGTTAATTGCATGTAATTATGCATGATTTATAGTTATTACTACAGCAACTAGCTTACATGTACTATGTGTAACAATGACACTGTAAAATAAAGTGTTACTGTACTTGGTAACGAGTAAATTATGCATAACTATAATCATAACATTAAGTAAGTACAGTTAATATTTACAGTTAGTTAATATTTCTCTTTGTTTATTGCATAATTGCACTGTAACGAGGACATCTTAAAATAAGAATTTTAGATTCTGCACTATTTCTTTTTCACTAGGAACACATTTGTGACGCTGAATTCACTTAAAAGATCAGATATTCTAGTAAATTCCCTGATCTTTGGAACTTCCTAAAAGCATACTGGATAACAGTTTTCGCACAAATGCCAGCATATGTGCAAAAAGGAGACATTCTGAATTCCTCTAAAAATGTCTTATCACAAAGCAAATAGAAATAAATAAATAACATTTCTGCCAGCTTTTTTACAGGGTGGTAGTAAAGAGTTAATACAGCCGTCAGATTCCTCCTCCTACGTAACTGTGTTTAGCCTACATAAACAAAGCTGAAATATTTCTTTCCACTCTTCTTTAGTCCCGTGATTGCACCAGAGGTCTCGCGCAGCTGTGCAGAGATGGATAAAAGTCGCGCGGACGCTTCACAGCGATTCTCCGAAATTATTGAGCTCAATGTCGGAGGGCAAGTTTACGTTACGCGGCACTCAACTTTACTCTCCGTGCCAAATTCTTTACTCTGGACAATGTTCAGTGAGAAGAAACCCGCGGAACTTACCACCGACAGCAAAGGACGCTTCTTTTTGGACAGGGACGGATTTTTGTTCAGATATATTCTGGATTACTTGCGGGACCAGACTCTGGTTTTGCCCGATTACTTCAAAGAGAAAGCGAGCCTTCTTAAAGAGGCAGAATATTTTCAACTTCAAGAGCTGGTGAGACGCCTGAGACCGGCAGTCAGTAAAGAGAACTCTATCACCGAGGAGGTGTGCCAGAGCGACCCGGAGGAGGCTGCGCTCGCAGGCACCAGTATCGCCAGCACCGGCCCTCGCTCACCGTCTCTGGACGCGAAAAAAACCGGCTACATAACAATCGGGTACAGGGGCTCCTATACCATAGGACGAGACATCCAACAGGACGCCAAATTTCGACGGGTGGCGAGAATCACAGTGTGCGGAAAAACGTCTCTCGCCAAAGAAGTTTTCGGGGAGACTCTGAACGAGAGCAGAGACCCCGACAGACTCCCAGAGAGATACACGTCTCGGTATTACCTGAAGTATAATTTCCTGGAGCAAGCCTTTGACAGGCTGGCGGAGGTGGGCTTCCACATGGTTGCTTGTAGCTCCACGGGCACCTGCGCGTACTCGAGTAACGACCCCAACGAGGACAAAATCTGGACGAGTTATACCGAAATGCAAACAGCCACTGATGGCATTTTCCAGTATTTAACTACAATAAGGTTTGGACTGGAGGAAGCACAAAATGTACTTTCGGTGATATGACCTTTTGAATTCAAATCAACCTTTATACTCAAGTTCTTAATATTTTGTGATATTAAAAGTTCATTACATTCCTGCATTTACACATTTCCCTCTGATTATATGGGATTATTAACAGTTTTGTTTTGATGTCTGTCAGCTTCACACACATATA

Function

symbol description
kctd12.2 Acts upstream of or within habenula development and regulation of dendrite morphogenesis. Predicted to be active in postsynaptic membrane and presynaptic membrane. Is expressed in brain. Orthologous to human KCTD12 (potassium channel tetramerization domain containing 12).

GO:

id name namespace
GO:0021986 habenula development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03631096_03632219.mRNA True 2752 mRNA 0.38 2 3629377 3632370

Neighbor

gene id symbol gene type direction distance location
CI01000049_03593799_03605097 SLC5A7 coding upstream 22886 3593727 ~ 3606491 (+)
CI01000049_03584412_03585910 ARL6 coding upstream 43278 3582032 ~ 3586099 (+)
CI01000049_03475307_03572415 EPHA6 coding upstream 56962 3475307 ~ 3572415 (+)
CI01000049_03292042_03304890 NA coding upstream 324276 3292042 ~ 3305101 (+)
CI01000049_03279568_03285640 ARL13B coding upstream 343192 3279568 ~ 3286185 (+)
CI01000049_03756695_03758838 KLF12 coding downstream 124053 3756423 ~ 3759295 (+)
CI01000049_03843068_03843461 NA coding downstream 210482 3842852 ~ 3843545 (+)
CI01000049_03844455_03850424 GPALPP1 coding downstream 212085 3844455 ~ 3850430 (+)
CI01000049_03852103_03860363 GTF2F2A coding downstream 219733 3852103 ~ 3860774 (+)
CI01000049_03872066_03885573 NA coding downstream 239696 3872066 ~ 3886240 (+)
G207889 NA non-coding upstream 1203 3627949 ~ 3628174 (+)
G207876 NA non-coding upstream 37540 3591457 ~ 3591837 (+)
G206829 NA non-coding upstream 258039 3371097 ~ 3371338 (+)
G206828 NA non-coding upstream 259980 3369113 ~ 3369397 (+)
G206827 NA non-coding upstream 260858 3368308 ~ 3368519 (+)
G207989 NA non-coding downstream 8882 3641252 ~ 3641553 (+)
G207995 NA non-coding downstream 28511 3660881 ~ 3866543 (+)
G208019 NA non-coding downstream 78381 3710751 ~ 3711934 (+)
G208071 NA non-coding downstream 267339 3899709 ~ 3901473 (+)
G208090 NA non-coding downstream 290056 3922426 ~ 3922879 (+)
G207888 NA other upstream 5066 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 1785549 1839815 ~ 1844077 (+)
G208074 NA other downstream 245026 3877396 ~ 3882211 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 841155 4473662 ~ 4476270 (+)
G209660 NA other downstream 3245763 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 3586478 7218811 ~ 7224268 (+)
G210091 NA other downstream 4241380 7873750 ~ 7878856 (+)

Expression


Co-expression Network