CI01000049_03864331_03867898 (TPT1)


Basic Information

Item Value
gene id CI01000049_03864331_03867898
gene name TPT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3864009 ~ 3867967 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03864331_03867898.mRNA
AGCTGAGTCCGCGATCAGGTCACAGCCAGCGCTGTTTGCCTCCTGACACCCCAAACACAATCCGACAAAATGATCATCTACAAGGACATCATCACCGGGGATGAGATGTTCTCCGACATCTACAAAATCAAAGAGTCTGAGAATGGAATGATGATTGAAGTGGAGGGGAAGATGATCAGCAGGTCAGAGGGAGACATAGACGATTCACTGATTGGTGGCAATGCATCAGCAGAAGTTCAGGATGAGGGCTGTGAGAGTTCCACTGTCAGCGGTGTGGATATTGTTCTCAACCACAAGCTTCAAGAGACCTCCTTTGACAAGAAATCTTACACGGCCCACATCAAGGACTACATGAAGGCAGTGAAAGCCAAGCTACAGGAAATTGCACCTGACAGGGTAGACCCCTTCATGGCTAACGCACCGGCTGAGGTCAAGAAAATTCTAGGCAACATCAAAAATTATCAGTTTTTCACTGGAGAATCAATGAATCCGGACGGCATGATTGGTCTCCTTGACTTCCGTGAGGATGGCGTCACACCATACATGCTCTTCTTCAAGGATGGTCTGGAGATTGAGAAATGCGACCAGAGGATCTTTTAAATTTACGAGGCCGCTGTTTTCGTTTCTTGACTGGCTTACGTCCGTCCATAGCAAGAAGACGTGAACAATCCATTCATGAAATTAAAAACAGGACTTTTAGCAAGCCAAACCACAATGTGAAAAGATTGTGGTAAAAAAACTGACTAATTTTGGGGTTCTTTTATTTCCTTGTCATCATGGAGGTGAAGTTGACTTGCTGGCTTCTCATTTGCTGTGCATGTCAGCTTCTTGTTTCAGCAGATGTACAGTTGTAATTTTCCCCCTGTTCCCATTGAGTCACAGGATTGTATAGGATTTCTTGGCACCATTATTGAAGAATAAA

Function

symbol description
tpt1 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in brain; eye; lateral mesoderm; liver; and spinal cord. Orthologous to several human genes including TPT1 (tumor protein, translationally-controlled 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03864331_03867898.mRNA True 922 mRNA 0.45 6 3864009 3867967

Neighbor

gene id symbol gene type direction distance location
CI01000049_03790418_03842410 PIBF1 coding downstream 21404 3789986 ~ 3842605 (-)
CI01000049_03782311_03782489 KLF5 coding downstream 81520 3781411 ~ 3782489 (-)
CI01000049_03749311_03749697 NA coding downstream 111964 3748089 ~ 3752045 (-)
CI01000049_03667851_03702669 NA coding downstream 161340 3667851 ~ 3702669 (-)
CI01000049_03256991_03257622 CLDNG coding downstream 606387 3256855 ~ 3257622 (-)
CI01000049_03889930_03891510 NA coding upstream 21770 3889737 ~ 3891704 (-)
CI01000049_03901904_03904746 NA coding upstream 33448 3899710 ~ 3905482 (-)
CI01000049_03910844_03911566 NA coding upstream 42792 3910759 ~ 3911708 (-)
CI01000049_03926423_03936158 NA coding upstream 58395 3926362 ~ 3937709 (-)
CI01000049_03937868_03938590 NA coding upstream 69854 3937821 ~ 3939159 (-)
G208287 NA non-coding downstream 103953 3756903 ~ 3760056 (-)
G208246 NA non-coding downstream 187205 3641999 ~ 3676804 (-)
G207990 NA non-coding downstream 222458 3641141 ~ 3641551 (-)
G207980 NA non-coding downstream 231201 3631059 ~ 3632808 (-)
G207974 NA non-coding downstream 250020 3613760 ~ 3613989 (-)
G208332 NA non-coding upstream 71629 3939596 ~ 3939797 (-)
G208413 NA non-coding upstream 295869 4163836 ~ 4164051 (-)
G208414 NA non-coding upstream 361904 4229871 ~ 4259908 (-)
G208459 NA non-coding upstream 424900 4292867 ~ 4293095 (-)
G207278 NA other downstream 1875242 1987011 ~ 1988767 (-)
G206938 NA other downstream 3036364 825859 ~ 827645 (-)
G206850 NA other downstream 3230814 632680 ~ 633195 (-)
G206849 NA other downstream 3232433 631143 ~ 631576 (-)
G209491 NA other upstream 2160122 6028089 ~ 6028469 (-)
CI01000049_08056071_08059039 TIMM10.S, TIMM10, TIMM10.L other upstream 4187666 8055633 ~ 8059179 (-)
CI01000049_08452153_08453389 CISD2 other upstream 4583175 8451142 ~ 8454233 (-)
G211175 NA other upstream 4597326 8465293 ~ 8476265 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G102074 NA non-coding NC_053120.1 CM020917.1 41209660 ~ 41268656 (+)
mexican tetra (Astyanax mexicanus) G101790 tpt1,LOC107598740,LOC107691594,LOC107567988,LOC107654875 non-coding NC_035908.1 CM008311.1 7435670 ~ 7507195 (-)