CI01000049_03893675_03894085


Basic Information

Item Value
gene id CI01000049_03893675_03894085
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3892179 ~ 3895169 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03893675_03894085.mRNA
GTATATATAAATCATATAATGATCCAGATGGAAAACATCCTCTGTGCTCTTCCTGTCAAAAACTCAATCAAAAATGTTGATGTGACATGTTTCTAAAATTAGCTTTCAAGTAGCACATTCTACAGTAGAAAATATTGCTCAGATTATTACCTTGTTTTGCAAATGTTCATAACTAGGTGTGTAACAAGTAGGCCAAGATGGTCATGTTATGGTGTTTGCACTCTGAAGAATCTCTTTTCTCGCTGTTTCTATATACAGCTGCATTTAAAAAGGTTTAGGGATTGTGTAAGGGACACAAAAATATCTATATTATAGTAAAATGTAACAAACATATTCAAAGAGTACATATATTTATATATTTATAATAAAAATATAAAGGATTTGTGAGAATTTTTACTTTTACATTGTATATGCTGCCAATACATCCATATTGTAAATTTTAGCATATATGCATACATAAAAGAATTAATTTGTAAACATTGTGTATGAAAATCTATACTAATGAAATGATAATATGTATGTGTAAAGTATAGCAAAATATCTAGTGCAACCAAAGCCAAATGAAAATGTGCAGGGCTCCGTTTAAGTACAGAACCACAGGAAGTCTAAGGAGTTACCACTTCCTGTATCTTGCAAAAAACCCTTCTAAACTCACCTTATATACCATGACTGATGGTTTTTTAGTTACCATTGGAAACAGGAAAACATTATTGTTTAATGGCACCATATCATAGATCACTTCAATATAGTGCATATACAAATAAATATGTTCACTTGGTGTGACAAACCACTTAAAGCCAATTGTGAATCGTCATTTACCACCCATTATACTTTCATAATGAGTAAAATATAGAGCTTTCGCCAGACCGCCTTCCGTATTCAAGTTACGAAGAAAGTGTAAACTGGCGTCACGTCAGTTAAGTTTTTTCTGTAAGTTGAATAGGGAAGGTGTAGGACGCAGTGTAAGCATTTTGAACTGCAAGAATTTTACACTTTCTTTGTAAGATATTTTACTTTTATAATTTTTTTTACACAAACGCATCGCCTCGCTTCAGAAGGCCTTTATTACTGTAAAATAACGGAAAAAGTACTGGCAGTTCATTACCAGGACATTATCCAGTAATTTTACGGACATTTCCGTTAACCCTACAACACAACTCAATGAAGTGAAAATTCTAAATACAGGTAAAACACTTGTAAAAAATAAATACGGAAATTTCCTTTAAATTAATACAGTACAAATTTGGACGTTGAGCTGAACATATGAATCGGAAAGGCAGCAGTAGCAATGGCTTGCCTGGCAAAAGGGATCTGGGATAACTCCATGTAAACAATCAACACTAAGATTACTTAACACACTGCTCTTCAGCAGCAAAACATGGACCCAATATTTTTTCCAAGAACCCAGATTCAATGTCTTCCATCTACGAAATCTAAGAAATATTTTGGGCATCTCCTGGCAGGACAACTTTCCAAAAAAAAAAAAAGTTCTCGCAATGGCAGGAATACCTAGTATGCTTTGCTCACCGAGAGATGTTTGCCCTTGGCTCGGTCATGTCAGCCACATGAGCAACGGTCAAATGCCCAAAGACCTGCTGTTCGGCAAACTTGCAACTGGCTCCAGGCCAGTAGGTAGGCTTGTATTCCGCTACAAAGATGTGTGTAAACAAGACCTAAAGGCATGCAACATCAATCTGGACAACTTGGAAGATGCAGCCAAAGATTGTGATAGATGGAGGCCTGCCGTCAAGCTAGGCATCGAAATTAGTGAAAAGAGTAGAGAGCACCAGAGGGAAGAGAGGAGAGAGTGCAGACGACAGAGAACAGACCCAACATCCACAGAGACAGGCATGATCTGCACTTGCATGTCTTTTTGCTCTACTGTCACAGCAGGCGCTGTAACTTAACAAATGTCTAGAGACCCCAAGGAGCAGATTTCATTGTCTTTCAAGACAGAAGGATGCAAATAATAATTTAGTAAAGCTTTTTGCTTAGCAAAACTAATCAGTCATAGACCTAAAAGAGACCTAAATATATAAGCAGACTTGTAATATCTGGAACTTTCTAAAAAGTCAAATCATGAGTTACATATAATTCACACTTATATATAATTAAATAAAGGTTATGCGTATTTGGTGTGCTTTCCGAGGGGAGGGCTCTGAGCTCGATATTTGACCAAACCCAAAGAACTCCCCCATCCCAGGTTGGGATAGGAATAGTTAGAAGTGATGGAGTGGTGGAGGGATGTTGGAAAACTGTCATAGAACAGAGGCAAGTTTGCTGTATATAGTCCTTTTATCTCGTTAATTGAGATTAACTGAATGTGCTCCTCCTGTGATAATTAGGTTAATTATCTGAACATGCTCCTCCTGAAATTTGTTAATAAAACATCATTAATGTTTCATGATGTAATGTTGTTATATTTTGGTGTTTCTGTTGTTCCTTTTCTTCCTTTCGTAGGATTGGTCCTGTGCGTAATGAGTGGCTGTTGGTGGATGGACCAGAGAAGAGACCCAGACTATAAATGCACCCAGAATTCCTCTGGAGGGAGCTCTGCCTCTTTGATTGCTTCCAAATTAAGTGACTTTTGTTGTAACTGTGTGTTAGATGGTGCAAATGTAGTGTGACAGATTGTTGTGATTTCTGTGATCTCTTCCTCGTGTTTGACAGAGTGCTGATAGCCACCTTTGATATAATTTTGTATGTAACATCAACTTCCTCTTTACGCTGTTTGCGATTTCTTAATTATTCTGAGGGAAGCCATAGGGGGTGAAAAAAAGAGCAAAAGCAAAGAAAACAAACAAGAGAAAAAGAAAAGAAAATAACATGAACAACTTTTTGGCCTTTGGTGCCAAGTTACTGTCTTGAATGTCTTGGATGTGAAGAAGTACACTTCATAGCTTTCAACACTTAGCCCACCCGCATCATTCTAAAATGAGTGTGTCCTATTCCCCTTCATCTTCACACTTCCAAGTCTTTGATGTGTTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03893675_03894085.mRNA True 2991 mRNA 0.37 1 3892179 3895169

Neighbor

gene id symbol gene type direction distance location
CI01000049_03872066_03885573 NA coding upstream 5939 3872066 ~ 3886240 (+)
CI01000049_03852103_03860363 GTF2F2A coding upstream 31405 3852103 ~ 3860774 (+)
CI01000049_03844455_03850424 GPALPP1 coding upstream 41749 3844455 ~ 3850430 (+)
CI01000049_03843068_03843461 NA coding upstream 48634 3842852 ~ 3843545 (+)
CI01000049_03756695_03758838 KLF12 coding upstream 132884 3756423 ~ 3759295 (+)
CI01000049_03951470_03952048 NA coding downstream 56153 3951322 ~ 3952173 (+)
CI01000049_03961350_03962120 NA coding downstream 66110 3961279 ~ 3962949 (+)
CI01000049_03972425_03973129 NA coding downstream 77077 3972246 ~ 3973847 (+)
CI01000049_04000506_04009508 USP38 coding downstream 104932 4000101 ~ 4009726 (+)
CI01000049_04064603_04090446 GAB1 coding downstream 169434 4064603 ~ 4090446 (+)
G207995 NA non-coding upstream 25636 3660881 ~ 3866543 (+)
G208019 NA non-coding upstream 180245 3710751 ~ 3711934 (+)
G207989 NA non-coding upstream 250626 3641252 ~ 3641553 (+)
G207889 NA non-coding upstream 264005 3627949 ~ 3628174 (+)
G207876 NA non-coding upstream 300342 3591457 ~ 3591837 (+)
G208071 NA non-coding downstream 4540 3899709 ~ 3901473 (+)
G208090 NA non-coding downstream 27257 3922426 ~ 3922879 (+)
G208095 NA non-coding downstream 37195 3932364 ~ 3932589 (+)
G208096 NA non-coding downstream 38103 3933272 ~ 3933626 (+)
G208098 NA non-coding downstream 44891 3940060 ~ 3940304 (+)
G208074 NA other upstream 9968 3877396 ~ 3882211 (+)
G207888 NA other upstream 267868 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 2048351 1839815 ~ 1844077 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 578356 4473662 ~ 4476270 (+)
G209660 NA other downstream 2982964 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 3323679 7218811 ~ 7224268 (+)
G210091 NA other downstream 3978581 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 4432783 8326285 ~ 8329915 (+)

Expression


Co-expression Network