XLOC_000953 (CABZ01113467.1)


Basic Information

Item Value
gene id XLOC_000953
gene name CABZ01113467.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 3305549 ~ 3330435 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001519
TGATTGTATGTATCTGTAAGGTTATCATTAAAAGTCTGAACAGTGGCTGTTTGTAGCCATTATCCATGTAGCTAATGAtaataaagaagaagaaaagcaTCAAATGGGTTGATCAAGCGAATAAAATGCGGTTTTgattatatcatttatttaatttgatttgttctGGTGTCTGCTGTTGTACCGGACTGAACCACTGGGTGTCACTATAGTCTAATAAACTGATCCACCACCGCTTGTAATGAAGATCCATCCGGAAGAGTTTTAAACTTGTTTACCAACACAACAGAAGCTGGATGGAGAGTGTCTCTGAGCTTCATCACATCCACCCTCTTTCCCCTCCCTCCCTAGAGGAATTGCATCTTTTGTCCGGAGACGCAGGGAACGGGGTGTTGACCAGAGGCAGTGTGACCCCCGCGTCCGTCAGGCCCCAAAAACTGCCCCCATTGAGCAGAAGAGGCCTGTGTTTGGGATGGGATGGGGGTTGGGAAGGTTACAAGCCAGCGATCAAGCACAAGACCTGCCCCGCAGCTCACTCCAACTCAACACACTTTCAGGAACAAAGAGGGAAAAACATGCACATTTTCTGCTCCCTCAAAAGACACTCCAGCTCCGCTCTTCAAGTTAACATGAACACATTCTGCCTGAACAATGCAGCAGATGCACATCATGGAGATCAGGGGTTCAGTCTCTCTTACAGTGGCATCTGCTAAAGTTGCAATTAgctgaaaactgaaaataaatattgttgcAAACACTTTCTTTCTCAATGCAATTCAGTAACTGCTTTATTGGTATgacaaatgttataaatgtattgcCAAGTAaagg
>TCONS_00001520
CCGGTGGCTCGACCTCAGCCTGACATCTCATCTCGGCTGTCTCTGAGCTTCATCACATCCACCCTCTTTCCCCTCCCTCCCTAGAGGAATTGCATCTTTTGTCCGGAGACGCAGGGAACGGGGTGTTGACCAGAGGCAGTGTGACCCCCGCGTCCGTCAGGCCCCAAAAACTGCCCCCATTGAGCAGAAGAGGCCTGTGTTTGGGATGGGATGGGGGTTGGGAAGGTTACAAGCCAGCGATCAAGCACAAGACCTGCCCCGCAGCTCACTCCAACTCAACACACTTTCAGGAACAAAGAGGGAAAAACATGCACATTTTCTGCTCCCTCAAAAGACACTCCAGCTCCGCTCTTCAAGTTAACATGAACACATTCTGCCTGAACAATGCAGCAGATGCACATCATGGAGATCAGGGGTTCAGTCTCTCTTACAGTGGCATCTGCTAAAGTTGCAATTAgctgaaaactgaaaataaatattgttgcAAACACTTTCTTTCTCAATGCAATTCAGTAACTGCTTTATTGGTATgacaaatgttataaatgtattgcCAAGTAaagg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117575

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001519 False 831 lncRNA 0.44 2 3305549 3309194
TCONS_00001520 True 564 lncRNA 0.49 2 3305549 3330435

Neighbor

gene id symbol gene type direction distance location
XLOC_000952 NA coding downstream 5696 3296607 ~ 3299853 (-)
XLOC_000951 gpc5a coding downstream 10504 3100244 ~ 3295045 (-)
XLOC_000950 CU986306.1 coding downstream 591274 2704604 ~ 2714275 (-)
XLOC_000949 NA coding downstream 802805 2495021 ~ 2502744 (-)
XLOC_000948 ggact.1 coding downstream 848003 2454094 ~ 2457546 (-)
XLOC_000954 NA coding upstream 514401 3844836 ~ 3846864 (-)
XLOC_000955 NA coding upstream 699334 4029769 ~ 4074148 (-)
XLOC_000956 NA coding upstream 753743 4084178 ~ 4250442 (-)
XLOC_000957 FP009765.2 coding upstream 880063 4210498 ~ 4210652 (-)
XLOC_000958 NA coding upstream 1453350 4783785 ~ 4785460 (-)
XLOC_000945 NA non-coding downstream 1054513 2239211 ~ 2251036 (-)
XLOC_000944 NA non-coding downstream 1204288 2093996 ~ 2101261 (-)

Expression


Co-expression Network