CI01000049_03944325_03944819


Basic Information

Item Value
gene id CI01000049_03944325_03944819
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3944289 ~ 3945258 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03944325_03944819.mRNA
AGCCCCTCCAAAAAGCATGCAAGCAAGGCAGGTTCATCCCACTCACATGTGGCAGCTAATGTGCGGAACTTTATGACGTAGTCAGCCACAGAGCACCTCCCCTGACGCAACACCGCAAGCATACGAGAAGCCTTCCGTCCTTAGACCGAATGGTCGAAAACCTTGGTCATCTCCTCCTTGAGCAAGGCTAACTTATCACAGCACGCCACCTCAGACTCCCAGATGGCCGTTGCCCAGTCACGTGCTCGCCCAGACAGCAACGAAATAATGAAGGTGACCTTGGCATCGTCCTCCGCGTAGGTGGAAGGCTGAAGGGAGAACACAACCTCACACTGGGTCAAGAACGCTCTGCACTCAGTGGGCTCACCCGAATAACGAGGAGGGTTGTTGACTCTGGGTTCGACAGCACTGCTAGATGCGGTGGGCTCGGCTGGTCATGATGGAGATAATGGAAGTGGCTGCTCAAATCAGTGACCTGGGCAGCAAGATTCTCAACGGCGTGCTTGGCAGCGAACAGCTCCTCTTTGTGTCTGCCCAGCATGGCTCCCTGCAGCTTGACTATGGAACGAATGGGTGCCTTTTTCGCTGGGTCCATGTTGGCCAAATTATTCTGTCAGGAGAGACAGAGGACCCAAGAGCGATGGCAGTTCACATCAAACAGAACGAAGAAACGGGTCCCAAGTTTGACAGAGGGCACATGGCAAAGAAGTTGCACAGACCCCAGCCAGCAGACACAGCACCGTCTACAGCAGAAGGCAAGGCGACCTCAGGCAGCAGGATGACTGGGCAGAGAACAGGTATGACGTGCACGACTAGACAGTACAATCAGGACTGGGACTAAGGCTGAGACTAACAAGACTGACTAACATATAATAAA

Function

NR:

description
gag polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03944325_03944819.mRNA True 877 mRNA 0.54 2 3944289 3945258

Neighbor

gene id symbol gene type direction distance location
CI01000049_03937868_03938590 NA coding downstream 5130 3937821 ~ 3939159 (-)
CI01000049_03926423_03936158 NA coding downstream 6580 3926362 ~ 3937709 (-)
CI01000049_03910844_03911566 NA coding downstream 32581 3910759 ~ 3911708 (-)
CI01000049_03901904_03904746 NA coding downstream 38807 3899710 ~ 3905482 (-)
CI01000049_03889930_03891510 NA coding downstream 52585 3889737 ~ 3891704 (-)
CI01000049_03993313_03994107 NA coding upstream 47387 3992645 ~ 3994107 (-)
CI01000049_04094686_04123864 FREM3 coding upstream 148866 4094124 ~ 4124296 (-)
CI01000049_04126260_04127962 NA coding upstream 180425 4125683 ~ 4130451 (-)
CI01000049_04144005_04150776 NA coding upstream 198726 4143984 ~ 4150776 (-)
CI01000049_04296486_04310931 SMAD1.L, SMAD1, SMAD1.S coding upstream 349868 4295126 ~ 4313107 (-)
G208332 NA non-coding downstream 4492 3939596 ~ 3939797 (-)
G208287 NA non-coding downstream 184233 3756903 ~ 3760056 (-)
G208246 NA non-coding downstream 267485 3641999 ~ 3676804 (-)
G207990 NA non-coding downstream 302738 3641141 ~ 3641551 (-)
G208413 NA non-coding upstream 218578 4163836 ~ 4164051 (-)
G208414 NA non-coding upstream 284613 4229871 ~ 4259908 (-)
G208459 NA non-coding upstream 347609 4292867 ~ 4293095 (-)
G208461 NA non-coding upstream 373954 4319212 ~ 4319433 (-)
G208462 NA non-coding upstream 376887 4322145 ~ 4322355 (-)
G207278 NA other downstream 1955522 1987011 ~ 1988767 (-)
G206938 NA other downstream 3116644 825859 ~ 827645 (-)
G206850 NA other downstream 3311094 632680 ~ 633195 (-)
G206849 NA other downstream 3312713 631143 ~ 631576 (-)
G209491 NA other upstream 2082831 6028089 ~ 6028469 (-)
CI01000049_08056071_08059039 TIMM10.S, TIMM10, TIMM10.L other upstream 4110375 8055633 ~ 8059179 (-)
CI01000049_08452153_08453389 CISD2 other upstream 4505884 8451142 ~ 8454233 (-)
G211175 NA other upstream 4520035 8465293 ~ 8476265 (-)

Expression


Co-expression Network