CI01000049_03972425_03973129


Basic Information

Item Value
gene id CI01000049_03972425_03973129
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 3972246 ~ 3973847 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_03972425_03973129.mRNA
CTTTAAAAATGTATAAATCTTTGCAGGCTGCCACATGCCTGACTTCCCAACTTCTTTAAATAAACAAAATAGATGATTGTGCTGTAGGATTTGCATGTTCCATGTCAGCAGCCCAGTGAGGTTGATAAACTGTTCAGTGCGCAACCATCCTAAAACCAAACCAGCTCACTACAGCAGAGATGAAGTTGACTCTCACTGGACTTCGCCTGTTTGTCCTTTATGGACTGACTACAGGTTATAGAGTACACATTTATGTGTCCACTCCAATGACCTGCACTTCTGCTCAGACGTACTGTAAAAAGTTTTATAAAAACCTGTCTATAGTCTTTAACAAAGAGGATCTTCAGATGCTTGAAGAGGCAGCTGGAGGAACATACAACAATAGTTGGATCAACAGCCAGGAAAACGTGTGCAAGTCACTGAAGTATGAGGACACAAATACTTCAGCTACAGAATACTTATTTGAAAATCCTTCCTTTTGTGCATTCACTAATGAGGTTCGTTGGAAAAAAACATCATGTTCAAATAAATTTCCTTTCTTCTGCTATGGGAATTTCATTCTGGTGCAGGAGAATAAGACATGGGAGGAAGCTCTGGAGTTCTGCAGGAGTCACTACACTGATCTGGCCTCTTTACATTTTGATTGGCCAGTAAATCAGATTCAAAATGAGACCAATAATTCTCAGACAGACAGTGTGTGGACAGGCCTGCGCTTTCTGGATGGAAACTGGTATTGGTTGAATGTGAAGAGTGTTCAGACCGACCTCCCTCTGCCCTCATGCCCACCTGAGCCGTACCGTTGTGGAGCCCGAAACACAGAGACAGAGCGATGGGAAAACAGACACTGTGAGGAGAAGCTCAACTTTCTGTGTCTCATGAAATAAAGGCAAGTGATGAACAAACATGAATATTGCCTTCACTTCATTTGCAGATTGATTCCAGTATGTTAACAGCTGAAATATATAGTAAAAAAATAAATAAATAAATGCATCTTGTTTACTAAAATTTACAAATATGTCTTTCTTAACAGATAACTGAGCACAGAAGCATTTCTCTGCAACAAAGAGGAAGTGGCTCAGATTTCTTTCATAAACATTATTATAAACATCTACAATATACTTTTTCATTTAAGAATATGACTTTTTTGTAGTCAGCTGCAATTAAATGTTTGTAATGGAAAAGTTTTGTAATGGTAAAATTTTCAGTTTGTATAAGTCTTCTAAGATCTGAAAAAAATAGGGGGATACAGAAATTTGGAAATGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAACCCTTTGTAATTATGTCTTAATACTTTTTGGTATTATTTCTGAGATTATAATATTTAAACTGCAAAATTAAATAATCTATATAACATTTGCAAACAGTCTCACATTAAACATGTAACAAACAACAAGTAATGGGAAAATATTATCTCTGTCTCTTGCCAGTTTTTCCAGTCTTTGCAAAGTTTAATTTAACCTTATTAGCATTTCTGTGTGTTTTCTATTTTCTGTGGATTACATGTTCTCAGGCTTTTTGCCCATTATGTTGCTGTATTTATTGATCTCCTGGACCTTTGTTTGTTCTA

Function

NR:

description
novel protein similar to lectins, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_03972425_03973129.mRNA True 1602 mRNA 0.36 1 3972246 3973847

Neighbor

gene id symbol gene type direction distance location
CI01000049_03961350_03962120 NA coding upstream 9297 3961279 ~ 3962949 (+)
CI01000049_03951470_03952048 NA coding upstream 20073 3951322 ~ 3952173 (+)
CI01000049_03893675_03894085 NA coding upstream 77077 3892179 ~ 3895169 (+)
CI01000049_03872066_03885573 NA coding upstream 86006 3872066 ~ 3886240 (+)
CI01000049_03852103_03860363 GTF2F2A coding upstream 111472 3852103 ~ 3860774 (+)
CI01000049_04000506_04009508 USP38 coding downstream 26254 4000101 ~ 4009726 (+)
CI01000049_04064603_04090446 GAB1 coding downstream 90756 4064603 ~ 4090446 (+)
CI01000049_04219938_04257323 HHIP coding downstream 246091 4219938 ~ 4257323 (+)
CI01000049_04277549_04287107 NA coding downstream 303702 4277549 ~ 4287444 (+)
CI01000049_04338384_04339298 NA coding downstream 364292 4338139 ~ 4339867 (+)
G208098 NA non-coding upstream 31942 3940060 ~ 3940304 (+)
G208096 NA non-coding upstream 38620 3933272 ~ 3933626 (+)
G208095 NA non-coding upstream 39657 3932364 ~ 3932589 (+)
G208090 NA non-coding upstream 49367 3922426 ~ 3922879 (+)
G208071 NA non-coding upstream 70773 3899709 ~ 3901473 (+)
G208110 NA non-coding downstream 174734 4148581 ~ 4151769 (+)
G208130 NA non-coding downstream 193237 4167084 ~ 4167339 (+)
G208144 NA non-coding downstream 233522 4207369 ~ 4207846 (+)
G208173 NA non-coding downstream 344545 4318392 ~ 4318643 (+)
G208176 NA non-coding downstream 403409 4377256 ~ 4381607 (+)
G208074 NA other upstream 90035 3877396 ~ 3882211 (+)
G207888 NA other upstream 347935 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 2128418 1839815 ~ 1844077 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other downstream 499678 4473662 ~ 4476270 (+)
G209660 NA other downstream 2904286 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 3245001 7218811 ~ 7224268 (+)
G210091 NA other downstream 3899903 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 4354105 8326285 ~ 8329915 (+)

Expression


Co-expression Network