CI01000049_04338384_04339298


Basic Information

Item Value
gene id CI01000049_04338384_04339298
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 4338139 ~ 4339867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_04338384_04339298.mRNA
AAATATATACACTCGAACCTGTCGATATCTGTTGGTTGAGAGACAAGGCAACTTCAGAGGCTTTTGGAGAGTATTTTCAGTGCGAAGATTGTGATTATTGAAGGAGTTTGGAGGATATTTTCTTTGAGTTTTATAATTTTATTTTTGAAGGAGTTCTTCTCTTTGAAAGAGACACCATTATTTTATTTGAGTTTTATTTTTGTTTTTTTCTTGTTGGAGTTTGGAGGACATTTTCAGTGGCTCACATGGGTGAAAGACGAGCTTCAGGCCGCTCCAGATCCAGGAGTGCAGCATTCACCCAGACGGCCAGTCAGGTTGGGACACATGGCTTTGGTGACAATGATCAGGAACCGCTGCCAAACCCAGCCCAGCCACTGAGTCGAGAGCTACCTGGCTATTTAGCACCTCTGCCTTCCGAGTTGGCTTCTTCTGTGTCAAAAGATCAGACTCACAGGAAGAGGAAGAGGCAGAGCAGCAGTCAGCAAGACCTAGATGATGGACAACCATCCACCTCATATAAGAGACCTGCCAAACGGACTTGCACAGCCTCAGGCCGCTCCAGATCCAGGAGTGGAGCGTTTACCCAGACGGCCAGTCAGGAGGTTGGGACACATGGCTCTGGTGACAACCATGATCAGGAACCACTGCCAAACCCAGCCCAGCCACTGAGTCAAGAGCTACATGGATATTTAGCTTCTCTGCCTTCTGAGTTGGCTTCTTCTGTGTCAAAAGATCAGACTCACAGGAAGAGGAAGAGGCAGAGCAGCAGTCAGCAAGCCCCAGATGATGGACAACCATCCACCAGAGTGCTGTCAGTTGATTAGCTGGTGTCTCAGTGCAGCGGTGGCAGACCGGCCCAGCTTAGATGACATTGAGCGCCATCCCTGGTTACACTGAACAGGTGGCCAGTGACATTACACTTATCTGAAGCACAGCAGTCATAGGTTGGATTGGATTGGATTGGATTGTTAGGATCAGTCTAGATAAAAGGTTTTAATTATTTGTATAGGGTGATCAGGAGTGACACAGGACCTGCAGAGACAGCTTCCTGTGCAACTACAGAAAAGAGGAGTGGACCATGAACTAATGGATGCTCCACAAACATGTTATTTTATCCTCTGCTCCACTGGTAGGGTCCCTGTGTGGATGAACATGCAGCTGAAACCGGAGCCCCGATGGGTCAGAGATCAGCTAGTTGGGCAGAGTCTAAGGTAGCAAAATGATGTGTATTTTTCCCCCAATTAGAGTAGAAAACTAGTGTAAAGTGTAGAGTGTAAACTAGCATAATGTGTTTTTGAAAATTAGGACAAGGAAATAAGAAAAATCAGAATAACAAATCTTACAGGTCAAGTAAGTCCAGTAGGTGGTGATACACACAGATTGCAAATCACCA

Function

NR:

description
hypothetical protein cypCar_00026667

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_04338384_04339298.mRNA True 1393 mRNA 0.46 3 4338139 4339867

Neighbor

gene id symbol gene type direction distance location
CI01000049_04277549_04287107 NA coding upstream 50695 4277549 ~ 4287444 (+)
CI01000049_04219938_04257323 HHIP coding upstream 80816 4219938 ~ 4257323 (+)
CI01000049_04064603_04090446 GAB1 coding upstream 247693 4064603 ~ 4090446 (+)
CI01000049_04000506_04009508 USP38 coding upstream 328413 4000101 ~ 4009726 (+)
CI01000049_03972425_03973129 NA coding upstream 364292 3972246 ~ 3973847 (+)
CI01000049_04345574_04350571 MMAA coding downstream 5707 4345574 ~ 4350859 (+)
CI01000049_04357318_04365664 NA coding downstream 17451 4357318 ~ 4365670 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 coding downstream 133795 4473662 ~ 4476270 (+)
CI01000049_04590737_04592306 POU4F2 coding downstream 250870 4590737 ~ 4593092 (+)
CI01000049_04704214_04715966 EDNRAA coding downstream 363453 4703320 ~ 4716713 (+)
G208173 NA non-coding upstream 19496 4318392 ~ 4318643 (+)
G208144 NA non-coding upstream 130293 4207369 ~ 4207846 (+)
G208130 NA non-coding upstream 170800 4167084 ~ 4167339 (+)
G208110 NA non-coding upstream 186370 4148581 ~ 4151769 (+)
G208098 NA non-coding upstream 397835 3940060 ~ 3940304 (+)
G208176 NA non-coding downstream 37389 4377256 ~ 4381607 (+)
G208240 NA non-coding downstream 136918 4476785 ~ 4477491 (+)
G208243 NA non-coding downstream 155858 4495725 ~ 4495913 (+)
G208507 NA non-coding downstream 167338 4507205 ~ 4507805 (+)
G208517 NA non-coding downstream 170373 4510240 ~ 4510465 (+)
G208074 NA other upstream 455928 3877396 ~ 3882211 (+)
G207888 NA other upstream 713828 3624002 ~ 3624311 (+)
CI01000049_01840330_01843844 FGF8B other upstream 2494311 1839815 ~ 1844077 (+)
G209660 NA other downstream 2538266 6878133 ~ 6882030 (+)
CI01000049_07219171_07224229 NA other downstream 2878981 7218811 ~ 7224268 (+)
G210091 NA other downstream 3533883 7873750 ~ 7878856 (+)
CI01000049_08326623_08329601 NA other downstream 3988085 8326285 ~ 8329915 (+)

Expression


Co-expression Network